Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 311 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like from Synechococcus elongatus PCC 7942

 Score = 61.6 bits (148), Expect = 2e-14
 Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 13/200 (6%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
           DLIQ G +GL  A + +D + G  F TYA   IR +M   +D+  R   +P  V +    
Sbjct: 102 DLIQEGSLGLERAVEKFDPALGYKFSTYAYWWIRQSMTRAIDNHARTIRLPIHVSEKISR 161

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAIS-- 160
           I +    L  +L R P+ AE+A+ L + L+    +L     +    ++     DD  S  
Sbjct: 162 IKKMTRELTHQLKRLPSRAEIAEALKLPLQDVEMLLS--QSTPCTSLDAQARGDDGRSFL 219

Query: 161 --PFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYY----DEELNLKEIGEV 214
                + +   P   +      + +   +  L ERE  VL L +     E+  L EIG  
Sbjct: 220 GDLIPDPKSLEPMDAMDRHIQHEQISTWLAHLTEREQQVLQLRFGLHDGEQHTLAEIGRR 279

Query: 215 LGVSESRVSQILSQSMQRLR 234
           L VS  R+ Q+ ++++Q+LR
Sbjct: 280 LNVSRERIRQVEARALQKLR 299