Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., flagellar biosynthesis sigma factor (RefSeq) from Shewanella amazonensis SB2B

 Score =  277 bits (709), Expect = 1e-79
 Identities = 139/242 (57%), Positives = 184/242 (76%), Gaps = 4/242 (1%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           MNKA  Y    ++ S+   +E+Y+ LVKRIAHH++ RLP SV ++DL+QAGM+GLLEA  
Sbjct: 1   MNKAAAYT---SMESKTSIVEQYAPLVKRIAHHMLARLPASVQLDDLLQAGMIGLLEASA 57

Query: 61  NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD 120
            +DG KGA FET+AGIRIRGAMLD+IR+GDWVPRSVH++ R ++Q I  LE EL RD  D
Sbjct: 58  KFDGGKGAKFETFAGIRIRGAMLDEIRKGDWVPRSVHRNQRRVAQVIDELEQELGRDARD 117

Query: 121 AEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFR 180
            E+A+ L+MS+E+YH +L D++  +I+GIEDLGVS D + P  E + N  +  +A+  F+
Sbjct: 118 TEIAERLDMSMEEYHHILNDVSVGKIIGIEDLGVSHDVLVPDGE-QTNDIYDDLAQSQFQ 176

Query: 181 KALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
           +AL ++I+ LPER+ALVLSLYYDE LNLKEIG +L VSESRV QI SQ+M RL+ KL  W
Sbjct: 177 QALADAIRQLPERDALVLSLYYDEALNLKEIGAILDVSESRVCQIHSQAMLRLKGKLKHW 236

Query: 241 TR 242
           T+
Sbjct: 237 TQ 238