Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 327 a.a., RNA polymerase sigma-38 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 61.2 bits (147), Expect = 2e-14
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 11/233 (4%)

Query: 15  SQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYA 74
           S+   +E    LV +IA     R    + + DLI+ G +GL+ A + +D  +G  F TYA
Sbjct: 87  SRNRMIESNLRLVVKIARRYNNR---GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 143

Query: 75  GIRIRGAM---LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSL 131
              IR  +   + +  R   +P  V K      +    L  +L+ +PT  E+A  LN+  
Sbjct: 144 TWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHKLDHEPTAEEIAAKLNLPS 203

Query: 132 EQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDN-SPFHGVAEESFRKALVESIKSL 190
            +   +L        V +   G +D A+      +D+  P + V +E    ++V  +  L
Sbjct: 204 VEVSRMLKLNEKITSVDVPLGGDNDKALLDVLPDDDSVGPDYKVQDEDISNSVVNWLNEL 263

Query: 191 PEREALVLSLYYD----EELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSS 239
             ++  VL+  +     E   L+++G  +G++  RV QI  ++++RLR  LS+
Sbjct: 264 NTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQIQVEALKRLRDILSA 316