Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 620 a.a., RNA polymerase sigma-70 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 65.1 bits (157), Expect = 3e-15
 Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 410 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 469

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+P+  E+A+ + M  ++   VL      I+    +G ++   
Sbjct: 470 LNRISRQMLQ----EMGREPSPEELAERMAMPEDKIRKVLKIAKEPISMETPIGDDEDSH 525

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+     P      ES ++A  E +  L  REA VL + +  ++N    L+E
Sbjct: 526 LGDFI---EDTTLELPLDSATSESLKQATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEE 582

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 583 VGKQFDVTRERIRQIEAKALRKLR 606