Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 969 a.a., DNA-directed RNA polymerase sigma subunit (sigma70/sigma32)-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score = 72.4 bits (176), Expect = 3e-17
 Identities = 57/215 (26%), Positives = 108/215 (50%), Gaps = 16/215 (7%)

Query: 26  LVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM--- 82
           LV  +A+  +GR    + + DL+Q G +GL++A + +D  KG  F TYA   IR A+   
Sbjct: 744 LVLSVANKYLGR---GLELADLVQEGNIGLMKAVEKFDHRKGFKFSTYATWWIRQAITRA 800

Query: 83  LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDIN 142
           + D  R   +P  V++   ++  A  VL  +  R P  +E++  L+M   +        N
Sbjct: 801 IADQARIIRIPVHVNESLNKLISASKVLTHKFGRGPKISELSLILSMPETKVE------N 854

Query: 143 CSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYY 202
             +I+ +E +  +D   + + +    SP   + ++     + + +K L ++E  VL L +
Sbjct: 855 LKQILVMEPVAEADHNTNGYVDWAAMSPEEEIIDDDRDTNIKDLLKGLTDKEKKVLELRF 914

Query: 203 D----EELNLKEIGEVLGVSESRVSQILSQSMQRL 233
                 EL L+E+G+   V+  R+ QI ++S+++L
Sbjct: 915 GINAATELTLEEVGQQFDVTRERIRQIEAKSLKKL 949