Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 662 a.a., RNA polymerase sigma factor RpoD from Phaeobacter inhibens DSM 17395

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 16/201 (7%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P  + +   +
Sbjct: 452 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 511

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGVSDDA 158
           + +    +  E+ R+PT  E+A+ L M LE+   V+      I+    +G E+    D  
Sbjct: 512 LVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEE----DSQ 567

Query: 159 ISPFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGE 213
           +  F E ++   P     +E+ ++     + SL  RE  VL + +   +N    L+E+G+
Sbjct: 568 LGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQ 627

Query: 214 VLGVSESRVSQILSQSMQRLR 234
              V+  R+ QI ++++++L+
Sbjct: 628 QFSVTRERIRQIEAKALRKLK 648