Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 239 a.a., flagellar biosynthesis sigma factor (RefSeq) from Shewanella loihica PV-4

 Score =  279 bits (713), Expect = 4e-80
 Identities = 145/242 (59%), Positives = 184/242 (76%), Gaps = 4/242 (1%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           M+KA  Y    N  S    +E+Y+ LVKRIAHHL+ RLP SV ++DL+QAGM+GLLEA  
Sbjct: 1   MSKAAAYTCLDNKAS---IVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASA 57

Query: 61  NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD 120
            +DGSKGA FET+AGIRIRG+MLD+IRRGDWVPRSVH++ R I+Q I  LE EL RD  D
Sbjct: 58  KFDGSKGAKFETFAGIRIRGSMLDEIRRGDWVPRSVHRNQRRIAQVIDELEQELGRDAKD 117

Query: 121 AEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFR 180
            E+A  L+M+L++YH +L D++  ++VGIEDLGVS D +   ++ +D++ F  +AE  F 
Sbjct: 118 NEIADRLDMTLDEYHHILNDVSVGKVVGIEDLGVSVDVVRQEDDHQDDA-FESLAETQFH 176

Query: 181 KALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
           +ALVE+IK LPER+ LVLSLYYDE LNLKEIG VL VSESRVSQI SQ+M RL+ KL  W
Sbjct: 177 EALVEAIKLLPERDGLVLSLYYDEALNLKEIGAVLDVSESRVSQIHSQAMLRLKAKLKHW 236

Query: 241 TR 242
           T+
Sbjct: 237 TK 238