Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score = 60.8 bits (146), Expect = 3e-14
 Identities = 60/235 (25%), Positives = 113/235 (48%), Gaps = 15/235 (6%)

Query: 15  SQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYA 74
           S+   +E    LV +IA     R    + + DLI+ G +GL+ A + +D  +G  F TYA
Sbjct: 84  SRNRMIESNLRLVVKIARRYNNR---GLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYA 140

Query: 75  GIRIRGAM---LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSL 131
              IR  +   + +  R   +P  V K      +    L  +L+ +PT  E+A+ L++  
Sbjct: 141 TWWIRQTIERAIMNQTRTIRLPIHVVKELNVYLRTARELAHKLDHEPTAEEIAEQLDLPS 200

Query: 132 EQYHSVLMDINCSRIVGIE-DLGVSDD--AISPFEEGEDNSPFHGVAEESFRKALVESIK 188
               S ++ +N  RI  ++  LG  +D   +    + +   P + V ++   K++V  + 
Sbjct: 201 SDV-SKMLKLN-ERITSVDTPLGGDNDKALLDVLADDDCVGPDYKVQDDDMSKSVVRWLD 258

Query: 189 SLPEREALVLSLYYD----EELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSS 239
            L  ++  VL+  +     E   L+ +G+ +G++  RV QI  ++++RLR  LS+
Sbjct: 259 ELNSKQREVLARRFGLLGYEPSTLENVGKEIGLTRERVRQIQVEALKRLRDLLSA 313