Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 616 a.a., RpoD family RNA polymerase sigma factor (RefSeq) from Shewanella loihica PV-4

 Score = 63.5 bits (153), Expect = 9e-15
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 406 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 465

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+P+  E+A+ + M  ++   VL      I+    +G ++   
Sbjct: 466 LNRISRQMLQ----EMGREPSPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 521

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+     P      ES + A  E +  L  REA VL + +  ++N    L+E
Sbjct: 522 LGDFI---EDTTLELPLDSATGESLKNATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEE 578

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 579 VGKQFDVTRERIRQIEAKALRKLR 602