Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., RNA polymerase sigma factor RpoS from Dechlorosoma suillum PS

 Score = 58.9 bits (141), Expect = 1e-13
 Identities = 62/247 (25%), Positives = 110/247 (44%), Gaps = 36/247 (14%)

Query: 11  GNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASF 70
           G   ++Q  +E    LV  IA H + R  P +   DL++ G +GL+ A + +D  +G  F
Sbjct: 81  GEFAARQKMIEHNLRLVVNIAKHYLNRGIPLL---DLVEEGNLGLIHALEKFDPERGFRF 137

Query: 71  ETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNREISQAIAVLEGEL----NRDPTDAEV 123
            TYA   IR ++   + +  R   +P  V K    + +A+  L+G      +R+    EV
Sbjct: 138 STYATWWIRQSIERAIMNQSRTIRLPVHVVKEINVVLRAMRHLDGARGLTPSRETRVEEV 197

Query: 124 AKFLNMSLEQYHSVL------------MDINCSRIVGIEDLGVSDDAISPFEEGEDNSPF 171
           A  L   ++    +L            +DI+ +  VG        D+++    G D  P 
Sbjct: 198 AHLLGKPVDDIRHILHLNEHVASLDTPLDIDPNHTVG--------DSVADDSAGAD--PV 247

Query: 172 HGVAEESFRKALVESIKSLPEREALVLSLYYD----EELNLKEIGEVLGVSESRVSQILS 227
             + E      +++ ++ LPE++  V+   Y     E   L+ I   LG++  RV QI  
Sbjct: 248 GVLQENELNDLVLQWVEQLPEKQRQVVERRYGLKGAEIATLEAIAADLGLTRERVRQIQG 307

Query: 228 QSMQRLR 234
           +++ +LR
Sbjct: 308 EALSQLR 314