Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 246 a.a., RNA polymerase sigma factor, FliA/WhiG family from Dechlorosoma suillum PS

 Score =  202 bits (515), Expect = 4e-57
 Identities = 109/235 (46%), Positives = 158/235 (67%), Gaps = 7/235 (2%)

Query: 7   YDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSK 66
           Y+  G L+ +QL +++++ LVKRIA+HL+ RLP SV +EDL+Q GM+GLL+A   ++   
Sbjct: 2   YNAAGQLDKEQL-VQRFAPLVKRIAYHLMARLPSSVQVEDLVQNGMIGLLDAMNRFETGH 60

Query: 67  GASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKF 126
           GA FETYA  RIRGAMLD +R  DW+PR + +  R I QAI  LE E  R PT+ E+A+ 
Sbjct: 61  GAQFETYAAQRIRGAMLDGLRENDWLPRGLRRDLRRIEQAITQLEQEHGRVPTEKELAEA 120

Query: 127 LNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEE----GEDNSPFHGVAEESFRKA 182
           ++MSL  Y  +L +    +++  ED   +++    F E      D  P   + E+S R+ 
Sbjct: 121 MDMSLADYQKMLGEARGHQLLYFEDF--TEEGEEGFLERHLTDHDADPLRLLEEQSLRQT 178

Query: 183 LVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
           LV SI  LPERE L+++LYY+++LNL+EIGEV+GV+ESRV Q+ SQ++ RLR K+
Sbjct: 179 LVASIGELPEREKLMMALYYEQDLNLREIGEVMGVTESRVCQLHSQAIARLRAKV 233