Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 656 a.a., RNA polymerase sigma factor, sigma-70 family from Dechlorosoma suillum PS

 Score = 61.6 bits (148), Expect = 4e-14
 Identities = 57/202 (28%), Positives = 98/202 (48%), Gaps = 18/202 (8%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 443 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 502

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDA 158
            NR   Q +     E   +P  A +A  + M  E+   +L  I+   I     +G  DD+
Sbjct: 503 MNRISRQILQ----ETGAEPDPATLAIKMEMPEEKIRKIL-KISKEPISMETPIGDDDDS 557

Query: 159 -ISPF-EEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIG 212
            +  F E+    +P         R+   E + +L  REA VL + +  E+N    L+E+G
Sbjct: 558 HLGDFIEDTATTAPVDAALYSGLREVTKEILDTLTPREAKVLRMRFGIEMNTDHTLEEVG 617

Query: 213 EVLGVSESRVSQILSQSMQRLR 234
           +   V+  R+ QI ++++++LR
Sbjct: 618 KQFDVTRERIRQIEAKALRKLR 639