Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., Alternative RNA polymerase sigma factor SigF from Mycobacterium tuberculosis H37Rv

 Score = 82.8 bits (203), Expect = 6e-21
 Identities = 65/217 (29%), Positives = 107/217 (49%), Gaps = 11/217 (5%)

Query: 26  LVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAMLDD 85
           L   IA    GR  P    +DLIQ   VGL+ A   +D   G+ F ++A   I G +   
Sbjct: 50  LADHIARRFEGRGEPR---DDLIQVARVGLVNAAVRFDVKTGSDFVSFAVPTIMGEVRRH 106

Query: 86  IRRGDW---VPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLMDIN 142
            R   W   VPR + + +  +  A A L   L R P+ +E+A  L M   +    L+  +
Sbjct: 107 FRDNSWSVKVPRRLKELHLRLGTATADLSQRLGRAPSASELAAELGMDRAEVIEGLLAGS 166

Query: 143 CSRIVGIEDLGVSDDAISPFEE--GEDNSPFHGVAEESFRKALVESIKSLPEREALVLSL 200
               + I+  G SDD      +  G+ ++   G+ +   R+ L   +++LPERE  VL L
Sbjct: 167 SYHTLSIDSGGGSDDDARAITDTLGDVDA---GLDQIENREVLRPLLEALPERERTVLVL 223

Query: 201 YYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKL 237
            + + +   +I E +G+S+  VS++L++S+ RLR +L
Sbjct: 224 RFFDSMTQTQIAERVGISQMHVSRLLAKSLARLRDQL 260