Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., RNA polymerase sigma factor SigB from Mycobacterium tuberculosis H37Rv

 Score = 65.9 bits (159), Expect = 1e-15
 Identities = 64/226 (28%), Positives = 105/226 (46%), Gaps = 17/226 (7%)

Query: 20  LEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIR 79
           LE    LV  +A    GR  P +   DLIQ G +GL+ A + +D +KG  F TYA   IR
Sbjct: 91  LEANLRLVVSLAKRYTGRGMPLL---DLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIR 147

Query: 80  GAM---LDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHS 136
            A+   + D  R   +P  + +   ++++    +   L R+ TD E+A    + +++ + 
Sbjct: 148 QAITRGMADQSRTIRLPVHLVEQVNKLARIKREMHQHLGREATDEELAAESGIPIDKIND 207

Query: 137 VLM----DINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPE 192
           +L      ++    VG E+     D I   E+ E  S  + V  E     +   + +L E
Sbjct: 208 LLEHSRDPVSLDMPVGSEEEAPLGDFI---EDAEAMSAENAVIAELLHTDIRSVLATLDE 264

Query: 193 REALVLSLYY----DEELNLKEIGEVLGVSESRVSQILSQSMQRLR 234
           RE  V+ L +     +   L +IG++ G+S  RV QI    M +LR
Sbjct: 265 REHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERDVMSKLR 310