Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase, sigma 70 subunit, RpoD subfamily (RefSeq) from Desulfovibrio vulgaris Miyazaki F

 Score = 63.9 bits (154), Expect = 7e-15
 Identities = 53/206 (25%), Positives = 100/206 (48%), Gaps = 16/206 (7%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P  + +   +
Sbjct: 380 DLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINK 439

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGVSDDA 158
           + +    L  EL RDPT  E+A+ ++  +++   VL      I+    +G E+    D +
Sbjct: 440 LIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEE----DSS 495

Query: 159 ISPF-EEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYY----DEELNLKEIGE 213
           +  F E+ +  +P   V      + +   +  L  RE  VL   +      +  L+E+G+
Sbjct: 496 LGDFIEDKKAVAPAEEVVNTKLSEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGK 555

Query: 214 VLGVSESRVSQILSQSMQRLRTKLSS 239
           +  V+  R+ QI ++++++LR  + S
Sbjct: 556 LFNVTRERIRQIEAKALRKLRHPVRS 581