Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 615 a.a., RNA polymerase, sigma 70 subunit, RpoD from Marinobacter adhaerens HP15

 Score = 65.1 bits (157), Expect = 3e-15
 Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 22/204 (10%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 400 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 459

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+ + + M  ++   VL      I+    +G ++   
Sbjct: 460 LNRISRQMLQ----EMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSH 515

Query: 155 SDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKE 210
             D I   E+ +  SP      E  R+A    +  L  RE+ VL + +  E+N    L+E
Sbjct: 516 LGDFI---EDIQALSPVDSATAEGLREATRSVLAGLTARESKVLRMRFGIEMNTDHTLEE 572

Query: 211 IGEVLGVSESRVSQILSQSMQRLR 234
           +G+   V+  R+ QI ++++++LR
Sbjct: 573 VGKQFDVTRERIRQIEAKALRKLR 596