Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., RNA polymerase sigma-27 factor (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  285 bits (729), Expect = 6e-82
 Identities = 148/241 (61%), Positives = 184/241 (76%), Gaps = 4/241 (1%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           MNKA  Y    N  S    +E+Y+ LVKRIAHHL+ RLP SV ++DL+QAGM+GLLEA  
Sbjct: 1   MNKAAAYTCLDNKTS---IVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASS 57

Query: 61  NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD 120
            +DG KGA FET+AGIRIRGAMLD+IRRGDWVPRSVH++NR I+QAI  LE  L RD  D
Sbjct: 58  KFDGGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRIAQAIDELEQVLGRDARD 117

Query: 121 AEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFR 180
            E+A+ L+M+L++YH +L D++  +I+GIEDLGVS+D ++  +   D + F  +AE  F 
Sbjct: 118 TEIAEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSEDILTTSDNVSDGT-FEVLAETQFH 176

Query: 181 KALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
            ALVE+IK LPER+ALVLSLYYDE LNLKEIG +L VSESRVSQILSQ+M RL+ KL  W
Sbjct: 177 SALVEAIKILPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKQW 236

Query: 241 T 241
           T
Sbjct: 237 T 237