Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 614 a.a., RNA polymerase sigma factor RpoD from Klebsiella michiganensis M5al

 Score = 66.2 bits (160), Expect = 1e-15
 Identities = 60/207 (28%), Positives = 102/207 (49%), Gaps = 28/207 (13%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVP----RSVHK 98
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P     +++K
Sbjct: 404 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 463

Query: 99  HNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGV 154
            NR   Q +     E+ R+PT  E+A+ + M  ++   VL      I+    +G ++   
Sbjct: 464 LNRISRQMLQ----EMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSH 519

Query: 155 SDDAISPFEEGEDNS---PFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN---- 207
             D I      EDN+   P      ES R A  + +  L  REA VL + +  ++N    
Sbjct: 520 LGDFI------EDNTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHT 573

Query: 208 LKEIGEVLGVSESRVSQILSQSMQRLR 234
           L+E+G+   V+  R+ QI ++++++LR
Sbjct: 574 LEEVGKQFDVTRERIRQIEAKALRKLR 600