Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 265 a.a., RNA polymerase sigma factor for flagellar operon FliA (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  132 bits (331), Expect = 9e-36
 Identities = 76/219 (34%), Positives = 120/219 (54%), Gaps = 2/219 (0%)

Query: 16  QQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQKNYDGSKGASFETYAG 75
           ++  +  Y+  ++ +A  L  +LP +V + +LI AG +GL+EA   +    G  FETYA 
Sbjct: 36  KEAIVRHYAPKIRFLALRLKAKLPRNVELGELISAGTLGLMEALGKFKPQLGIRFETYAE 95

Query: 76  IRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYH 135
            RIRGAMLD++RR DW PRS+ +  R++ +A+  +E E  R  T+ ++ K   +  +   
Sbjct: 96  SRIRGAMLDELRRLDWFPRSLRQRVRQLDEAMQRIEHETGRRATEEDLQKATGLDEKDVR 155

Query: 136 SVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFRKALVESIKSLPEREA 195
             L  +     + +E   + D          D  P    A +   + +   I  L  RE 
Sbjct: 156 LGLEALQNQLCLSLE--AMQDSLAGEGGPQSDADPMQTAATQELIERVASLIDELTPREK 213

Query: 196 LVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLR 234
           LVLSLYY +ELN++E  EV+G++E RVSQ+ SQ++ RLR
Sbjct: 214 LVLSLYYSDELNMRETAEVMGITEGRVSQLHSQALGRLR 252