Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 64.7 bits (156), Expect = 4e-15
 Identities = 54/208 (25%), Positives = 101/208 (48%), Gaps = 16/208 (7%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P  + +   +
Sbjct: 380 DLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINK 439

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGVSDDA 158
           + +    L  EL RDPT  E+A+ ++  +++   VL      I+    +G E+    D +
Sbjct: 440 LIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEE----DSS 495

Query: 159 ISPF-EEGEDNSPFHGVAEESFRKALVESIKSLPEREALVLSLYY----DEELNLKEIGE 213
           +  F E+ +  +P   V      + +   +  L  RE  VL   +      +  L+E+G+
Sbjct: 496 LGDFIEDKKAVAPAEEVVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGK 555

Query: 214 VLGVSESRVSQILSQSMQRLRTKLSSWT 241
           +  V+  R+ QI ++++++LR  + S T
Sbjct: 556 LFNVTRERIRQIEAKALRKLRHPVRSQT 583