Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 664 a.a., RNA polymerase, sigma 70 subunit, RpoD family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 65.9 bits (159), Expect = 2e-15
 Identities = 53/201 (26%), Positives = 100/201 (49%), Gaps = 16/201 (7%)

Query: 46  DLIQAGMVGLLEAQKNYDGSKGASFETYAGIRIRGAM---LDDIRRGDWVPRSVHKHNRE 102
           DLIQ G +GL++A   ++  +G  F TYA   IR A+   + D  R   +P  + +   +
Sbjct: 454 DLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINK 513

Query: 103 ISQAIAVLEGELNRDPTDAEVAKFLNMSLEQYHSVLM----DINCSRIVGIEDLGVSDDA 158
           + +    +  E+ R+PT  E+A+ L M LE+   V+      I+    +G E+    D  
Sbjct: 514 LVRTGRQMLHEIGREPTPEELAEKLQMPLEKVRKVMKIAKEPISLETPIGDEE----DSQ 569

Query: 159 ISPFEEGEDN-SPFHGVAEESFRKALVESIKSLPEREALVLSLYYDEELN----LKEIGE 213
           +  F E ++   P     +E+ ++     + SL  RE  VL + +   +N    L+E+G+
Sbjct: 570 LGDFIEDKNAVLPLDSAIQENLKETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQ 629

Query: 214 VLGVSESRVSQILSQSMQRLR 234
              V+  R+ QI ++++++L+
Sbjct: 630 QFSVTRERIRQIEAKALRKLK 650