Pairwise Alignments

Query, 244 a.a., RNA polymerase sigma factor FliA from Vibrio cholerae E7946 ATCC 55056

Subject, 237 a.a., flagellar biosynthesis sigma factor (RefSeq) from Shewanella sp. ANA-3

 Score =  284 bits (726), Expect = 1e-81
 Identities = 146/241 (60%), Positives = 185/241 (76%), Gaps = 4/241 (1%)

Query: 1   MNKALTYDQYGNLNSQQLFLEKYSVLVKRIAHHLIGRLPPSVLIEDLIQAGMVGLLEAQK 60
           MNKA  Y     L+S+   +E+Y+ LVKRIAHHL+ RLP SV ++DL+QAGM+GLLEA  
Sbjct: 1   MNKAAAYTC---LDSKTSIVEQYAPLVKRIAHHLLARLPASVQLDDLLQAGMMGLLEASS 57

Query: 61  NYDGSKGASFETYAGIRIRGAMLDDIRRGDWVPRSVHKHNREISQAIAVLEGELNRDPTD 120
            +DG KGA FET+AGIRIRGAMLD+IRRGDWVPRSVH++NR ++QAI  LE  L RD  D
Sbjct: 58  KFDGGKGAKFETFAGIRIRGAMLDEIRRGDWVPRSVHRNNRRVAQAIDELEQVLGRDARD 117

Query: 121 AEVAKFLNMSLEQYHSVLMDINCSRIVGIEDLGVSDDAISPFEEGEDNSPFHGVAEESFR 180
            E+A+ L+M+L++YH +L D++  +I+GIEDLGVS D ++  +   D + +  +AE  F 
Sbjct: 118 TEIAEKLDMTLDEYHHILNDVSVGKIIGIEDLGVSQDILTSSDNVSDGT-YEALAETQFH 176

Query: 181 KALVESIKSLPEREALVLSLYYDEELNLKEIGEVLGVSESRVSQILSQSMQRLRTKLSSW 240
            ALVE+IK LPER+ALVLSLYYDE LNLKEIG +L VSESRVSQILSQ+M RL+ KL  W
Sbjct: 177 SALVEAIKLLPERDALVLSLYYDEALNLKEIGAILEVSESRVSQILSQAMLRLKGKLKHW 236

Query: 241 T 241
           T
Sbjct: 237 T 237