Pairwise Alignments

Query, 122 a.a., chemotaxis protein CheY from Vibrio cholerae E7946 ATCC 55056

Subject, 1763 a.a., sensory box histidine kinase/response regulator (RefSeq) from Shewanella amazonensis SB2B

 Score = 76.3 bits (186), Expect = 2e-18
 Identities = 47/123 (38%), Positives = 68/123 (55%), Gaps = 8/123 (6%)

Query: 1    MKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQG 60
            M +L+VDD ST R I++  L+ +GF+    A  G+ AL    + D+   + DW MP M G
Sbjct: 1279 MAVLVVDDNSTARDILRTTLQSMGFS-VDSARSGMEALEKCAERDYRIALIDWKMPEMDG 1337

Query: 61   IDLLKNIRADEELKHLP-VLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIF 119
             +    +R   ELK  P +LM++A A  E I +  + G+NGYI KP +A+ L   LD I 
Sbjct: 1338 TETAARMR---ELKQPPLILMVSAHANSEFIDKVEEMGINGYITKPISASRL---LDGIM 1391

Query: 120  ERL 122
              L
Sbjct: 1392 SAL 1394



 Score = 53.9 bits (128), Expect = 9e-12
 Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 2    KILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGDFDFVVTDWNMPGMQGI 61
            +IL+V+D    + +    L  +G      AD+G  AL  L +  FD V+ D  MP M G 
Sbjct: 1421 RILLVEDNEMNQEVASEFLEQVGVV-LSIADNGQIALEKLGQQSFDLVLMDCQMPVMDGY 1479

Query: 62   DLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKL 115
               + +R    L  LPV+ +TA A          AG+N +I KP     L + L
Sbjct: 1480 QATRELRKLPGLAELPVVAMTANAMAGDKEMCLLAGMNDHIAKPIEVGILYQTL 1533