Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., chemotaxis protein CheA from Rhodanobacter denitrificans FW104-10B01

 Score =  419 bits (1077), Expect = e-121
 Identities = 249/567 (43%), Positives = 333/567 (58%), Gaps = 82/567 (14%)

Query: 209 PGAQSPQAPASAPAKAASVTNSDLNGDITDDEFEKLLDQLHGKGKGPSIETAAPAAPVTP 268
           PGA+    PA   A AA+   S   G I D EFE LLD ++G        +AAP      
Sbjct: 125 PGAR----PAPVVAPAATPAPSADGGAIDDSEFEALLDSMYG--------SAAPG----- 167

Query: 269 STPKATETPKPAAAKSAPGGDDLMTDEEFEKLLDELHGSGKGPSVEELEMATRPVASSPV 328
                  T  PAA   AP     + D+EFE LLD LHG                      
Sbjct: 168 -------TVAPAALPVAPAASATIDDDEFEALLDALHG---------------------- 198

Query: 329 SSDAKASAEASAPSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVKDSDESREVAAAGG 388
               KA   A+  +  PAA  VA+  A KPA A      APA                  
Sbjct: 199 ----KAGQPAAVAAMAPAA--VAEMVAPKPAAATAAHHAAPA------------------ 234

Query: 389 AKKAQTESTVRVDTSTLDTIMNMVGELVLVRNRLLSLGLNSNDEEMSKAVANLDVVTADL 448
                 E++VRVDT+ LD ++N  GELVLVRNRLLSL      E ++ A   LD VT +L
Sbjct: 235 ------ENSVRVDTARLDLLVNHAGELVLVRNRLLSLAARHGSEVLAAAAGELDRVTDEL 288

Query: 449 QGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHL 508
           Q AVM  RMQP+ ++F RFPR+VRDLAR L K+++L L GE TDLD++LVEALADPLIHL
Sbjct: 289 QNAVMGMRMQPVGRLFQRFPRIVRDLARQLGKDVELVLEGEGTDLDRSLVEALADPLIHL 348

Query: 509 VRNSVDHGIEMPDERAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKR 568
           +RN++DHG+E P ER + GK R G+V LSASQ G+ I +A+ DDG GMDP  LR  AV++
Sbjct: 349 LRNALDHGVEQPAERERAGKPRKGRVCLSASQRGERIVIAVRDDGRGMDPAILRRKAVEK 408

Query: 569 GIMDEDAANRLTNKECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDST 628
           G++D   A+RL+  EC+ LIF PGFS+   ++DISGRGVGMDVVKT +  L G++ + S 
Sbjct: 409 GVIDAAQASRLSEAECYELIFRPGFSTAAAVSDISGRGVGMDVVKTRVAELGGTLQVRSQ 468

Query: 629 MGKGTKITIKVPLTLAILPTLMVGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVR 688
           +G G+++ + VPLTLA+L  LMV V    FALP+ +V E+F LD  +  ++DG+L    R
Sbjct: 469 LGHGSELELTVPLTLAVLRVLMVRVGTRLFALPMGNVEEVFELDADQDCLLDGRLVARHR 528

Query: 689 EKSIPLFYLQNWLAPKKGKVQLRQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKL 748
            +++PL  L  W A       +  G  HVV++ IG QR+G +V  ++G+E+V++KPL  L
Sbjct: 529 GRALPLLDLAGWAA-----AMVAAGR-HVVVLHIGHQRLGCLVHEVLGREDVIVKPLGPL 582

Query: 749 LQGTPGMSGATITSDGHIALILDVPDL 775
             G PG++GAT+T DG +AL++D+  L
Sbjct: 583 FDGVPGIAGATVTGDGRLALVMDLAGL 609



 Score =  166 bits (420), Expect = 4e-45
 Identities = 115/285 (40%), Positives = 145/285 (50%), Gaps = 57/285 (20%)

Query: 1   MSYELDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLAL 60
           M+ E D ++ QDFLVEAGE+L+ L EQLV LE  P D +LLNA+FR FHTVKGGAGFLAL
Sbjct: 1   MNAEFDSELRQDFLVEAGELLQRLGEQLVGLEAAPGDGELLNAVFRAFHTVKGGAGFLAL 60

Query: 61  SELVETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELL 120
             +V  CH AE++ +  RNG+  +    MD +L+ALD +N+   AV    PL    P LL
Sbjct: 61  EPMVVLCHHAEDLLNEARNGKVVLGAVHMDALLEALDLLNDMMAAVSTEAPLDMPPPALL 120

Query: 121 DELHRLSKPASEDEDEAAEAHFDEPEEELVEEIIEEVVEDVVEEAVPNVETEVTASASSG 180
             L   ++PA                                    P V    T + S+ 
Sbjct: 121 QSLLPGARPA------------------------------------PVVAPAATPAPSA- 143

Query: 181 VIDKGSIDDINEDEFEKLLDELHGKGKAPGAQSPQAPASAPAKAASVTNSDLNGDITDDE 240
             D G+IDD    EFE LLD ++G   APG  +P A   APA +A+         I DDE
Sbjct: 144 --DGGAIDD---SEFEALLDSMYGSA-APGTVAPAALPVAPAASAT---------IDDDE 188

Query: 241 FEKLLDQLHGKGKGPSIETAAPAAPVTPSTPKATETPKPAAAKSA 285
           FE LLD LHGK   P     A  A + P+       PKPAAA +A
Sbjct: 189 FEALLDALHGKAGQP-----AAVAAMAPAAVAEMVAPKPAAATAA 228