Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 700 a.a., Signal transduction histidine kinase CheA (EC 2.7.3.-) from Pseudomonas fluorescens FW300-N2E2

 Score =  285 bits (729), Expect = 6e-81
 Identities = 168/439 (38%), Positives = 257/439 (58%), Gaps = 13/439 (2%)

Query: 342 STKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVKDSDESREVAAAGGAKKAQTESTVRVD 401
           S +PA +  A  A  +    + +  + PA  A        +  A     KA+  + VRV+
Sbjct: 258 SPEPAEETTALVATGELLSDQRKTPRMPAQIAT-------DKQAVSSDSKAKDGTYVRVN 310

Query: 402 TSTLDTIMNMVGELVLVRNRLLSLGLNSNDEEMSKAVANLDVVTADLQGAVMKTRMQPIK 461
              LD ++N+VGELV+       L    +++ + ++ + +  +  ++    ++ RM PI 
Sbjct: 311 ADKLDELINLVGELVIASAGASLLARTCHNDPLQESTSTVSSLVEEILDGALRLRMIPIG 370

Query: 462 KVFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPD 521
           + F RF RVVRD+++ L K+IDL + G ET+LDK +VE + DPL+HL+RN++DHGIE  +
Sbjct: 371 ETFNRFRRVVRDVSQELGKDIDLIISGAETELDKTVVEKIGDPLMHLLRNAMDHGIETAE 430

Query: 522 ERAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTN 581
            R   GK   G + L+A  +   I L I DDGAG++ D++   A +RG++   A+   T+
Sbjct: 431 ARLAAGKPAKGHLHLNAYHDSGSIVLEIADDGAGLNRDRILEKAQERGLVSPGASP--TD 488

Query: 582 KECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPL 641
           +E +NLIF PGFS+ + +T++SGRGVGMDVVK  I  L G++D+DS  GKGT + I++PL
Sbjct: 489 QEIYNLIFEPGFSTAQAVTNLSGRGVGMDVVKRNITLLRGTVDLDSQPGKGTVVRIRLPL 548

Query: 642 TLAILPTLMVGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWL 701
           TLAI+   +VG+    + +PL  V E   L          Q  + +R + +PL YL++  
Sbjct: 549 TLAIINGFLVGIGQSTYVIPLDMVQECIELSENDGVASREQGYLDLRGEVLPLVYLRDHF 608

Query: 702 APKKGKVQLRQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATIT 761
           +  +G    RQ   +VV+V+    + GLVVD L+G+ + VIKPL KL     G+SG+TI 
Sbjct: 609 S-HEGPPARRQ---NVVVVRYAELKAGLVVDDLLGEFQTVIKPLGKLFGALRGISGSTIL 664

Query: 762 SDGHIALILDVPDLLKQYA 780
             G +ALILDVP LL Q A
Sbjct: 665 GSGAVALILDVPALLTQIA 683



 Score = 77.4 bits (189), Expect = 2e-18
 Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 1   MSYELDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLAL 60
           +S  LD+   Q F+VEA E L+ + E L++LE +P D D + AIFR  HT+KG AG   L
Sbjct: 1   VSINLDQ-AQQTFIVEAREQLQAMEESLLQLETDPGDDDAIGAIFRAAHTIKGSAGLFGL 59

Query: 61  SELVETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNE 101
             +V   H  E+V D LRNG   V   L+  +LK+ D + E
Sbjct: 60  EPIVSFTHIVEDVLDRLRNGSVEVDAGLIAVLLKSSDHMLE 100