Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 2408 a.a., Chemotaxis protein histidine kinase and related kinases from Pseudomonas stutzeri RCH2

 Score =  228 bits (582), Expect = 2e-63
 Identities = 209/812 (25%), Positives = 363/812 (44%), Gaps = 71/812 (8%)

Query: 4    ELDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSEL 63
            E D ++++ FL E  +++E  +  L     + ++   L A+ R  HT+KGGA    + E+
Sbjct: 1468 ERDPELVEIFLEEGFDLIESAAGGLQRWMADVDNSFELEALQRDLHTLKGGARMADIREI 1527

Query: 64   VETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDEL 123
             +  H  E +++ L  G    SP L   +    D + E   AV+  +P+ P+   L++ +
Sbjct: 1528 GDLSHELEFLYEGLCAGNYRASPELFGLLQACQDRLAEMLEAVRAHQPV-PSGEALIETI 1586

Query: 124  HRLS---------------KPASEDEDEAAEAHFDEPEEELVEEIIEEVVEDVV------ 162
             R                 K A +D  ++AEA   +   E  ++++EE+   +       
Sbjct: 1587 RRFRNNPEEQLSIPSSVSLKAAQDDAQQSAEAEILDIFVEEADDLLEEMESALGRWDAGR 1646

Query: 163  EEAVPNVET-EVTASASSGVIDKGSIDDIN-EDEFEKLLDELHGKGKAPGAQSPQAPASA 220
            E+A P  +   V  +   G    G  D  N   + E++L E   +G AP   S       
Sbjct: 1647 EDAAPLADMLRVLHTLKGGARLAGQTDLGNMAHDLEQMLGEAQQQG-APWPDSLFLDVQQ 1705

Query: 221  PAKAASVTNSDLNGDITDDEFEKLLDQLHGKGKGPSIETAAPAAPVTPSTPKATETPKPA 280
               A       L  ++  D   +       + +   +E   P+ P+  + P    + +PA
Sbjct: 1706 GYDALLKDVEQLRANLASDGETRSDSSEASQPEAQDLEPQLPSEPLMLAQPIVAASTQPA 1765

Query: 281  AAKSAPGGDDLMTDEEFEKLLDELHGSGKGPSVEELEMATRPVASSPVSSD-AKASAEAS 339
             + S              K+L         P +   ++A +  A+     +  K  AE  
Sbjct: 1766 PSSSPA------------KVL---------PFIRRAQLAAQEAAARRAPQELVKVPAELL 1804

Query: 340  APSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVKD-SDESREVAAAGGAK-----KAQ 393
                  A +        +  V+          A ++   D+ R +     A+     +A+
Sbjct: 1805 EGLVNLAGETSIFRGRVEQQVSDVGFTLGEMEATIERVRDQLRRLDTETQAQILSRYQAE 1864

Query: 394  TESTVRVDTSTLDTIMNMVGELVLVRNRLLSLGLNSNDEEMSKAVANLDV---------V 444
             E     D   L+  M+   +L  +   L     +  D + + A  N D          V
Sbjct: 1865 AERAGYDDFDPLE--MDRHSQLQQLSRALFESASDLLDLKETLAARNRDAETLLLQQARV 1922

Query: 445  TADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADP 504
              +LQ  +M+TRM P +++  R  R+VR +A  L K+++  +     ++D++++E +  P
Sbjct: 1923 NTELQEGLMRTRMVPFERLVPRLRRIVRQVAGELGKQVEFMVGNATGEMDRSVLERIVAP 1982

Query: 505  LIHLVRNSVDHGIEMPDERAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGI 564
            L H++RN+VDHGIE  + R   GK   G + L  ++EG  I L + DDGAG++ D +R  
Sbjct: 1983 LEHMLRNAVDHGIESVERRRAVGKPEQGTIRLDLAREGGDIVLTLADDGAGINLDAVRRK 2042

Query: 565  AVKRGIMDEDAANRLTNKECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSID 624
            A++RG+M  D  + L+  E    I   GFS+ E++T ISGRGVGMDVV + +  L GS+ 
Sbjct: 2043 AIERGLMVAD--SDLSEHEILQFILEAGFSTAERVTQISGRGVGMDVVHSEVKQLGGSMT 2100

Query: 625  IDSTMGKGTKITIKVPLTLAILPTLMVGVAGHPFALPLASVNEIFHL---DLRRTNVVDG 681
            I+ST+G+GT+  I++P T+++   LMV      +A+PL ++  I  +   +L      D 
Sbjct: 2101 IESTLGQGTRFLIRLPFTVSVNRALMVYSGEDLYAIPLNTIEGIVRVSPYELEAYYQPDA 2160

Query: 682  QLTIIVREKSIPLFYLQNWL-APKKGKVQLRQGHGHVVIVQIGSQRVGLVVDTLIGQEEV 740
                    ++  L YL + L   +K K+  +     V++V+     V + VD+L G  E+
Sbjct: 2161 P-RFEYAGQAYELRYLGDLLNNGQKPKLVGQSLPLPVILVRSKEHSVAVQVDSLAGSREI 2219

Query: 741  VIKPLDKLLQGTPGMSGATITSDGHIALILDV 772
            V+K L     G  G+SGATI  DG + +ILD+
Sbjct: 2220 VVKSLGPQFAGVHGISGATILGDGRVVVILDL 2251



 Score = 62.4 bits (150), Expect = 3e-13
 Identities = 50/214 (23%), Positives = 100/214 (46%), Gaps = 24/214 (11%)

Query: 4    ELDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSEL 63
            ELD ++++ FL EA +++E     L     +P ++  L+A+ R  HT+KGGA   A+  +
Sbjct: 1233 ELDHEMVEIFLDEAVDLMESAGHALDRWLADPANQMALSALLRDLHTLKGGARMAAIRPI 1292

Query: 64   VETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDEL 123
             +  H  E++++ L +G+   S  L   + ++ D +  Q   +Q   P+  AD  L++ +
Sbjct: 1293 GDLAHELESLYEGLSDGRYVHSQELATLLQRSHDHLALQLEQLQRETPMSCAD-ALIESM 1351

Query: 124  HRLSKPA-----SEDEDEAA-----------------EAHFDEPEEELVEEIIEEVVEDV 161
                +       S +ED+A+                 E   D+P++E +     ++    
Sbjct: 1352 QAFRQGVLPVFESVEEDDASQPLPVDDPILNEELLTIEYQADQPQDEPLSSDSLDISLVE 1411

Query: 162  VEEAVPNVETEVTASASSGVIDKGSIDDINEDEF 195
            +E+ +P  + +  A   + V D    +D++E EF
Sbjct: 1412 IEDDLPEAQEKAVAEEINAV-DVPLAEDLDEIEF 1444



 Score = 54.3 bits (129), Expect = 8e-11
 Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 18/138 (13%)

Query: 5   LDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELV 64
           +DED+L+ F+ EA E+LE + EQL     + ED++ L  + R FHT+KG    +    + 
Sbjct: 744 VDEDLLEVFIEEAAEVLETIGEQLPRWFADTEDKEALGEVRRAFHTLKGSGRMVRALIIG 803

Query: 65  ETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDELH 124
           E     EN+ +            ++D  ++  D V +    V     L PA   L+DE  
Sbjct: 804 ELAWSIENLLN-----------RVLDRSIQVTDPVKQVVTGV---IALMPA---LVDEFA 846

Query: 125 RLSKPASEDEDE-AAEAH 141
             ++   +D D+ AA AH
Sbjct: 847 AKAQRQRDDVDQLAAAAH 864