Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 695 a.a., putative CheA signal transduction histidine kinase (RefSeq) from Shewanella amazonensis SB2B

 Score =  310 bits (794), Expect = 2e-88
 Identities = 187/493 (37%), Positives = 288/493 (58%), Gaps = 26/493 (5%)

Query: 291 LMTDEEFEKLLDELHGSGKGPSVEELEMATRPVASSPVSSDAKASAEASAPSTKPAAKPV 350
           L+TDE  EKL +           +E E++ +  A++P    A  S E  +PS +    P 
Sbjct: 211 LITDEPLEKLKEVFEWVE-----DECEISYQQTAAAP---SADTSTEMLSPSPQSEVDP- 261

Query: 351 AKPAAAKPAVAKEEPAKAPAPAAVKDSDESREVAAAGGAKKAQTESTVRVDTSTLDTIMN 410
             P AA   +A     +A A      S +    AA  G       S++RV T  +D ++N
Sbjct: 262 --PVAAPDVIALTPQVQALATDKAVASQKQSAAAAKSGES-----SSIRVSTEKIDMLIN 314

Query: 411 MVGELVLVRNRLLSLGLNS--NDEEM---SKAVANLDVVTADLQGAVMKTRMQPIKKVFG 465
           MVGELV+ +  L  +G     N E +    + +  L   T DLQ +VM+ RM PI   F 
Sbjct: 315 MVGELVITQAMLGQIGQQDEINQESLLLLQQGLEQLASHTRDLQESVMQIRMLPISFAFN 374

Query: 466 RFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAK 525
           RFPR+VRD+ + L K+++L L+GE+T+LDK ++E + DP++HLVRNS+DHG+E P+ R  
Sbjct: 375 RFPRLVRDIGQQLGKKVELILKGEDTELDKTVLEKIVDPMVHLVRNSLDHGLESPEARLA 434

Query: 526 NGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECF 585
            GKS TG ++L+A  +G  I + I DDGAG++  K+   A ++G++   A   L+ +   
Sbjct: 435 QGKSETGTIMLNAYHQGGCIIIEIADDGAGLNTHKILEKARQKGLV--GAEEELSEEAIH 492

Query: 586 NLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAI 645
            LIF PGFS+ + ++D+SGRGVGMDVVK  I+ LNGSI++ S  GKG++ TI++PLTLAI
Sbjct: 493 QLIFRPGFSTADAVSDLSGRGVGMDVVKRNIHELNGSIELKSEAGKGSRFTIRLPLTLAI 552

Query: 646 LPTLMVGVAGHPFALPLASVNEIFHLDLRRTN-VVDGQLTIIVREKSIPLFYLQNWLAPK 704
           L   ++ +  H + +PL S+ E   +   R N + DG   I +R++ +P+  +       
Sbjct: 553 LDGQLIRIGKHIYVVPLVSIYESLQVPTNRINRLSDGHELIRLRDEYLPVIKMYREFNHD 612

Query: 705 KGKVQLRQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDG 764
               +++   G V++V   +++ GL+VD L+ Q++VVIK L++     PG+SGATI  DG
Sbjct: 613 ADAREIKD--GLVMVVDHNNEKAGLLVDELLAQQQVVIKSLEENYTRIPGISGATILGDG 670

Query: 765 HIALILDVPDLLK 777
            +ALI+DV  L+K
Sbjct: 671 TVALIIDVAGLVK 683



 Score = 60.5 bits (145), Expect = 3e-13
 Identities = 33/110 (30%), Positives = 59/110 (53%), Gaps = 1/110 (0%)

Query: 11  QDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVETCHGA 70
           Q F  E+ E L ++  +L++L+    D + +N IFR  H++KGG+      ++    H  
Sbjct: 10  QVFFEESIEGLAIMESELLKLDVAAPDPETINTIFRAAHSIKGGSATFGFMQVANYTHLL 69

Query: 71  ENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRA-VQEREPLQPADPEL 119
           E + D +R+G+R + P  +D +L ++D +   F A + + E   P  PEL
Sbjct: 70  ETLLDEIRDGRRQMQPDHVDMLLLSVDLLRGMFEALMSQAEFNDPKLPEL 119