Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 942 a.a., CheA Signal Transduction Histidine Kinases (STHK) (NCBI) from Rhodospirillum rubrum S1H

 Score =  313 bits (801), Expect = 4e-89
 Identities = 196/551 (35%), Positives = 294/551 (53%), Gaps = 43/551 (7%)

Query: 238 DDEFEKLLDQLHGKGKGPSIETAAPA-APVTPSTPKATETPKPAAAKSAPGGDDLMTDEE 296
           DD+  K       +GK PS+   APA A    S P  +E   P AA              
Sbjct: 111 DDKDLKAHLNAFAEGKQPSVAAMAPAPARAAGSGPAISEGGYPVAA-------------- 156

Query: 297 FEKLLDELHGSGKGP-SVEELEMATRPVASSPVSSDAKASAEASAPSTKPAAKPVAKPAA 355
            E L +      KG  +  E E+A    A    +  A+ +  A  P   P  K      A
Sbjct: 157 -ELLAEVSEAVAKGKRAATEAELAAELAAELAAAEKAEQAVAAPVPEVIPEVK------A 209

Query: 356 AKPAVAKEEPAKAPAPAAVKDSDESREVAAAGGAKK--AQTESTVRVDTSTLDTIMNMVG 413
           A P V   +PAK PA  A  D++        GG +K  +    ++RV+   L+ +M +V 
Sbjct: 210 ATPVV---QPAKPPAVTAAHDTNGPN--GGGGGEQKEGSVASQSIRVNVELLENLMTLVS 264

Query: 414 ELVLVRNRLLSLGLNSNDEEMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRVVRD 473
           ELVL RN+LL +   S+D E    +  L  +T DLQ  VMKTRMQPI   + + PR+VRD
Sbjct: 265 ELVLTRNQLLQMVRGSDDSEFVAPLQRLSHITTDLQEGVMKTRMQPIGNAWAKLPRIVRD 324

Query: 474 LARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSRTGK 533
           L+  ++K+IDL++ G +T+LD+ ++E + DPL H+VRNS DHG+E PDERA  GK  TG 
Sbjct: 325 LSIEMHKKIDLQMYGADTELDRQVLEMIKDPLTHMVRNSGDHGLEFPDERAAAGKPETGV 384

Query: 534 VILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFMPGF 593
           + L+A  EG HI + I DDG G++ +++R  A+  G+  E     +T+++    IF  G 
Sbjct: 385 IKLNAYHEGGHIIIEISDDGRGLNLERIRAKALSNGLATEAELENMTDQQIAQYIFRAGL 444

Query: 594 SSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLMVGV 653
           S+ EK+T +SGRGVGMDVVKT I  + G++++ +  GKG++  IK+PLTLAI+  L+V  
Sbjct: 445 STAEKVTAVSGRGVGMDVVKTNIEKIGGTVELKTWPGKGSRFVIKIPLTLAIVSALIVEA 504

Query: 654 AGHPFALPLASVNEIFHLDLRRTNVVDGQLT---IIVREKSIPLFYLQNWLAPKKGKVQL 710
           +G  FA+P  SV E+  +       ++   T   + +R++ +PL  L   L    G  + 
Sbjct: 505 SGERFAIPQISVLELVRVTANSETTIEQINTAPVLRLRDRLMPLVSLSALLRLDDGDDEE 564

Query: 711 ----------RQGHGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATI 760
                     R+    +V+ Q+G+   G++VD +   EE+V+KP+  +L+     SG TI
Sbjct: 565 LGKTADATAGRRDETFIVVSQVGTYTFGIIVDRVFDTEEIVVKPVAPILRHVSMFSGNTI 624

Query: 761 TSDGHIALILD 771
             DG + +ILD
Sbjct: 625 LGDGSVIMILD 635



 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 18/239 (7%)

Query: 7   EDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVET 66
           +D+L +FL E  E +  L  +LV LE NP D+ +L+ IFR  HT+KG  GFL L  L   
Sbjct: 2   DDLLSEFLTETSESIATLDVELVNLERNPNDKGILSNIFRLVHTIKGTCGFLGLPRLESL 61

Query: 67  CHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPA--DPELLDELH 124
            H  ENV    R+G   V+P+ +  +L  +D + E    ++  E ++P   D +L   L+
Sbjct: 62  AHAGENVLGKFRDGDLEVTPAAVTVILHTIDRIKEILGHLEANE-VEPEGDDKDLKAHLN 120

Query: 125 RLSKPASEDEDEAAEA---------HFDEPEEELVEEIIEEVVEDVVEEAVPNVETEVTA 175
             ++         A A            E    +  E++ EV E V +      E E+ A
Sbjct: 121 AFAEGKQPSVAAMAPAPARAAGSGPAISEGGYPVAAELLAEVSEAVAKGKRAATEAELAA 180

Query: 176 SASSGVIDKGSIDDINEDEFEKLLDELHGKGKAPGAQSPQAPASAPAKAASVTNSDLNG 234
             ++ +      +        +++ E+  K   P  Q    PA  PA  A+   +  NG
Sbjct: 181 ELAAELAAAEKAEQAVAAPVPEVIPEV--KAATPVVQ----PAKPPAVTAAHDTNGPNG 233