Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., CheA signal transduction histidine kinase (RefSeq) from Shewanella loihica PV-4

 Score =  297 bits (760), Expect = 1e-84
 Identities = 171/471 (36%), Positives = 274/471 (58%), Gaps = 34/471 (7%)

Query: 315 ELEMATRPVASSPVSSDAKASAEASAPSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAV 374
           +++   +P AS       +   EA+A S   A+     PA+ +P    E+PA    P+ V
Sbjct: 228 DIDYQAQPKASEASEITTEKEIEATAESDIQASTQTTTPASVQP----EKPASQTRPSVV 283

Query: 375 KDSDESREVAAAGGAKKAQTESTVRVDTSTLDTIMNMVGELVLVRNRLLSLGLNSNDEEM 434
                         + K Q   ++RV    +D ++NMVGELV+ +  L  +G     EEM
Sbjct: 284 --------------SSKTQDAGSIRVSIEKIDLLINMVGELVITQAMLGQIG---QQEEM 326

Query: 435 S--------KAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLNKEIDLEL 486
           +        + +  L   T DLQ +VM+ RM PI   F RFPR+VRD+ + L K+++L L
Sbjct: 327 TPESFITMKQGLEQLASHTRDLQESVMQIRMLPISFAFNRFPRLVRDIGQQLGKKVELIL 386

Query: 487 RGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSRTGKVILSASQEGDHIQ 546
           +GE+T+LDK ++E + DP++HLVRNS+DHG+E P+ R + GK  TG + L+A  +G +I 
Sbjct: 387 KGEDTELDKTVMEKIVDPMVHLVRNSLDHGLETPEVRRQKGKPETGTLTLNAFHQGGNII 446

Query: 547 LAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFMPGFSSKEKITDISGRG 606
           + I+DDGAG++  K+   A  +G++  D    L+ +    LIF PGFS+ E ++D+SGRG
Sbjct: 447 IEIIDDGAGLNTQKILDKARAKGLVGSD--EELSEEAIHQLIFKPGFSTAETVSDLSGRG 504

Query: 607 VGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLMVGVAGHPFALPLASVN 666
           VGMDVV   I+ LNG+I++ ST  KG++ TI++PLTLAIL   +V +  H + +PL +++
Sbjct: 505 VGMDVVLRNIHELNGTIELKSTQDKGSRFTIRLPLTLAILDGQLVRIGTHTYVVPLVAIH 564

Query: 667 EIFHLDLRRTNVVDGQLTII-VREKSIPLFYLQNWLAPKKGKVQLRQGHGHVVIVQIGSQ 725
           E   +     N +  +  +I +R++ +P+  +      +    Q++   G V++V   + 
Sbjct: 565 ESLEVPAAHINRLSEEHEVIRLRDEYLPVLKVYEAFHHEADAKQIKD--GLVMVVDANND 622

Query: 726 RVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDGHIALILDVPDLL 776
           +VGL+VD L+ Q++VVIK L+       G+SGATI  DG +ALI+D+  L+
Sbjct: 623 KVGLLVDELLSQQQVVIKSLEDNYSKVAGISGATILGDGTVALIIDIAGLV 673



 Score = 65.1 bits (157), Expect = 1e-14
 Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 3/136 (2%)

Query: 11  QDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLALSELVETCHGA 70
           Q F  E+ E LE +  +L++L+    D + +N IFR  H++KGG+G    +++    H  
Sbjct: 10  QVFFEESLEGLESMESELLKLDIAAPDPEAINTIFRAAHSIKGGSGTFGFNQVANYTHLL 69

Query: 71  ENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELLDELHRLSKPA 130
           E + D +R+G+R ++    D +L ++D +     AV  ++     DP L D   + +   
Sbjct: 70  ETLLDEIRDGRREMTSHHQDILLLSVDLLRNMLDAVMHQQTFD--DPMLSDLEQKFAAEL 127

Query: 131 SEDEDEAAEAHFDEPE 146
           S+ E +  E    EPE
Sbjct: 128 SQGESQEDETQ-REPE 142