Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 758 a.a., chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  837 bits (2163), Expect = 0.0
 Identities = 477/807 (59%), Positives = 567/807 (70%), Gaps = 80/807 (9%)

Query: 1   MSYELDEDILQDFLVEAGEILELLSEQLVELENNPEDRDLLNAIFRGFHTVKGGAGFLAL 60
           M++++DE+ILQDFL+EAGEILELL EQLV LENNP+D DLLNAIFRGFHTVKGGAGFL+L
Sbjct: 1   MAFDVDEEILQDFLIEAGEILELLQEQLVALENNPDDTDLLNAIFRGFHTVKGGAGFLSL 60

Query: 61  SELVETCHGAENVFDILRNGQRHVSPSLMDTMLKALDTVNEQFRAVQEREPLQPADPELL 120
           + +V+ CH AEN FD+LR G+R V+  LMD +L+A+D +N  F   Q+ E   PAD  LL
Sbjct: 61  TPMVDVCHEAENTFDLLRTGKRSVTAELMDIILQAVDAINTMFAQTQQGEQQDPADAALL 120

Query: 121 DELHRLSKPASEDEDEAAEAHFDEPEEELVEE---IIEEVVEDVVEEAVPNVETEVTASA 177
            +L  LS      E   +E     PE EL+ E   +IE +VE  V E +P    E   SA
Sbjct: 121 AKLKLLSS----GEPLPSELGQRAPEPELIPEPEPVIETIVEVAVVEEMP---VETVDSA 173

Query: 178 SSGVIDKGSIDDINEDEFEKLLDELHGKGKAPGAQSPQAPASA-------PAKAASVTNS 230
           SS      SID+IN+ EFE LLD LHG GK PG  +    A++       PA+AA  T+ 
Sbjct: 174 SS------SIDEINDAEFEALLDALHGNGKGPGVATSNVAAASISNAVKPPAQAA--TSG 225

Query: 231 DLNGDITDDEFEKLLDQLHGKGK-GPSIETAAPA--------APVTPSTPKATETPKPAA 281
           D   DITDDEFE LLD+LHG GK    +E + PA        AP + + P AT       
Sbjct: 226 D---DITDDEFEALLDELHGSGKFSGKVEESVPAKLKAEVVAAPASATVPTATSVDS--- 279

Query: 282 AKSAPGGDDLMTDEEFEKLLDELHGSGKGP-----SVEELEMATRPVASSPVSSDAKASA 336
                   D +TD+EFE+LLDELHG G  P       E  +    PVA++      KAS 
Sbjct: 280 --------DEITDDEFERLLDELHGKGGTPVKAVAKAEAAKTVPTPVAATATPVAPKASV 331

Query: 337 EASAPSTKPAAKPVAKPAAAKPAVAKEEPAKAPAPAAVKDSDESREVAAAGGAKKAQTES 396
            A+ P   P  KP A+   A+         KAP  AA          AAA      Q E+
Sbjct: 332 TAAIP---PTVKPKAEVVVAE---------KAPVKAA----------AAASSTSVPQGET 369

Query: 397 TVRVDTSTLDTIMNMVGELVLVRNRLLSLGLNSNDEEMSKAVANLDVVTADLQGAVMKTR 456
           TVRVDT+ LD IMNMVGELVLVRNRL+SLG++ +DEEMSKA+ANLD+VTADLQGAVMKTR
Sbjct: 370 TVRVDTARLDQIMNMVGELVLVRNRLVSLGISRDDEEMSKALANLDLVTADLQGAVMKTR 429

Query: 457 MQPIKKVFGRFPRVVRDLARSLNKEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHG 516
           MQPIKKVFGRFPRVVRDLAR+LNKEIDL L GEETDLDKNLVEALADPL+HLVRNSVDHG
Sbjct: 430 MQPIKKVFGRFPRVVRDLARTLNKEIDLVLVGEETDLDKNLVEALADPLVHLVRNSVDHG 489

Query: 517 IEMPDERAKNGKSRTGKVILSASQEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAA 576
           IEMP++R  +GK RTG + LSASQEGDHI L I DDGAGMDP+KL+ IA+KRG++DED+A
Sbjct: 490 IEMPNDREASGKPRTGVITLSASQEGDHILLKIEDDGAGMDPEKLKQIAIKRGVLDEDSA 549

Query: 577 NRLTNKECFNLIFMPGFSSKEKITDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKIT 636
            R+T+ E +NLIF PGFS+K +I+DISGRGVGMDVVKT I  LNG++ IDS  GKGT + 
Sbjct: 550 ARMTDNEAYNLIFAPGFSTKVEISDISGRGVGMDVVKTRITQLNGTVHIDSMKGKGTILE 609

Query: 637 IKVPLTLAILPTLMVGVAGHPFALPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFY 696
           IKVPLTLAI+PTLMV VA   FALPL+SVNEIFHLDL +TN+VDGQLT+IVR K++PLFY
Sbjct: 610 IKVPLTLAIMPTLMVDVAKQVFALPLSSVNEIFHLDLTKTNIVDGQLTVIVRNKAVPLFY 669

Query: 697 LQNWLAPKKGKVQLRQG---HGHVVIVQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTP 753
           L++WL   + K   + G   HGHVVIVQ+G  ++G VVD LIGQEEVVIKPL  LL GTP
Sbjct: 670 LEHWL--HRNKTNFKHGDKKHGHVVIVQLGIMQIGFVVDALIGQEEVVIKPLGALLHGTP 727

Query: 754 GMSGATITSDGHIALILDVPDLLKQYA 780
           GM+GATITSDG IALILDVP LLK YA
Sbjct: 728 GMAGATITSDGGIALILDVPGLLKHYA 754