Pairwise Alignments

Query, 785 a.a., chemotaxis protein CheA from Vibrio cholerae E7946 ATCC 55056

Subject, 702 a.a., chemotaxis protein CheA (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  292 bits (747), Expect = 5e-83
 Identities = 178/479 (37%), Positives = 267/479 (55%), Gaps = 23/479 (4%)

Query: 317 EMATRPVASSPVSSDAKASAEASAPSTKPAAKPVAKPAAAK-----------PAVAKEEP 365
           E  T     S +++     A  +  + +P +KPV  P+  K             VA  +P
Sbjct: 227 ESLTPESVDSEINALVHIQANKAIAAIEPLSKPVNSPSVPKIPRYTGNTAESTKVAPADP 286

Query: 366 AKAPAPAAVKDSDESREVAAAGGAKKAQT---ESTVRVDTSTLDTIMNMVGELVLVRNRL 422
              P+P   K      +       KK  T   ++T+RV+TS +DT++N+ GELV+ ++ L
Sbjct: 287 VD-PSPVLNKSVASGTKSTPTAATKKGNTSTQDATLRVETSKIDTLVNLAGELVITQSML 345

Query: 423 LSLGLNSNDE---EMSKAVANLDVVTADLQGAVMKTRMQPIKKVFGRFPRVVRDLARSLN 479
             +G   + E    +  A+  L+  T ++Q AVM  RM P+  VF RF R+VRDL+  L 
Sbjct: 346 TLIGNEISGELGERLKTALVELERNTREMQEAVMSVRMLPVSFVFNRFHRLVRDLSDQLG 405

Query: 480 KEIDLELRGEETDLDKNLVEALADPLIHLVRNSVDHGIEMPDERAKNGKSRTGKVILSAS 539
           K ++L + G  T++DK ++E L DPL HLVRNS+DHGIE P+ R   GK+   ++ L AS
Sbjct: 406 KNVNLVIEGGNTEIDKGMIEKLVDPLTHLVRNSLDHGIEKPEVRRLLGKAEIAQLSLRAS 465

Query: 540 QEGDHIQLAIVDDGAGMDPDKLRGIAVKRGIMDEDAANRLTNKECFNLIFMPGFSSKEKI 599
           Q G +I +A+ DDGAG+  +K+   A +  +      + + +K+ + LIF  GFS+ ++I
Sbjct: 466 QRGGNIVIAVHDDGAGLHREKILQKARENNM---SVTDNMPDKQIWQLIFAAGFSTAKEI 522

Query: 600 TDISGRGVGMDVVKTAINTLNGSIDIDSTMGKGTKITIKVPLTLAILPTLMVGVAGHPFA 659
           TD+SGRGVGMDVV+  I  L G IDIDS  G+G    I++PLTLAI+  + V V    + 
Sbjct: 523 TDVSGRGVGMDVVRRNIEALGGRIDIDSVAGQGATFEIQLPLTLAIVDGMSVSVGKQIYI 582

Query: 660 LPLASVNEIFHLDLRRTNVVDGQLTIIVREKSIPLFYLQNWLAPKKGKVQLRQGHGHVVI 719
           LPL  + E       +   +  +  I VRE+ +PL  L   +  +          G VV+
Sbjct: 583 LPLVHIIESIQPHTEQLKYLAQERLIRVREEYLPLLNLHQLM--EITPFAKCPEEGIVVL 640

Query: 720 VQIGSQRVGLVVDTLIGQEEVVIKPLDKLLQGTPGMSGATITSDGHIALILDVPDLLKQ 778
           ++  ++R GL VD L+GQ++VVIK L+K  +  PG+SGATI  DG +ALILDV  L +Q
Sbjct: 641 LESNNKRFGLCVDALVGQQQVVIKSLEKHYRRIPGVSGATIMGDGSVALILDVESLAQQ 699