Pairwise Alignments

Query, 338 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., CheW protein (RefSeq) from Shewanella loihica PV-4

 Score =  193 bits (490), Expect = 6e-54
 Identities = 124/330 (37%), Positives = 188/330 (56%), Gaps = 16/330 (4%)

Query: 7   SSEQALNDYFTALLDEETAEFESTLKPEPVWEMAPAIQSVPNKSYFDAEIEELELPNLED 66
           S ++A+ +YF+ LL E   E  +  KPE   E A A Q+   +    A ++   L     
Sbjct: 4   SVDEAVFNYFSLLLSEPGEESVTADKPEVKGEQAIA-QNGQMRGPAPA-VKRQPLTEQSK 61

Query: 67  VQRLLSQLESSNPVADLDLEQILEENTAKIAKIDPVVQPCSVVEEIQEWEIETSYVEP-D 125
            + +++Q  +  P+  L LEQ+L    A +++I    +     +   + E++T   +P  
Sbjct: 62  PRPVVTQA-TPTPLNKLALEQLL----APVSEIATQTE----TQTASKVELKTLDTKPAS 112

Query: 126 IETPESVIEDDLEPES-VDTEAEREIAIETSIEEPVAEVPVVEAQAVPETQAGRNKLGTW 184
           +ET    +    + ES V  + E ++    SI++       V+  A P+TQ G    G  
Sbjct: 113 VETMTQAVSVQTKSESQVKQKIEEKLETSASIKQEEIVTEKVDLAAAPQTQTGATPPGVT 172

Query: 185 TNTIREKD--FQVLYFDVNGVTFAVPLDELGGIHRMTTLNHLIGRPAWYLGLQTNRDSQL 242
              + + D  FQVL+F V G+T AVPL  LGGI ++  +NH++GRPAWYLG+QT+RDSQL
Sbjct: 173 EALVEQLDDEFQVLFFKVAGLTLAVPLVSLGGIVKVERINHIMGRPAWYLGVQTHRDSQL 232

Query: 243 DVVDTAKWVMAEKLRDESYKQA-YQYIVMLGESAWGLASTQLMGTELLSTEKVRWREQVG 301
           ++VD+  WVM EK  D+  +   YQYIV+L +S WGLA   L+ +  +   +V WR + G
Sbjct: 233 NIVDSGAWVMPEKYDDKLAQSVDYQYIVLLEDSNWGLACESLVNSVRILKSEVNWRTKAG 292

Query: 302 KRPWLAGMVKEKMCALIHVQALIAMLNAGL 331
           KRPWLAG+VKE+MC ++HVQALI +LN GL
Sbjct: 293 KRPWLAGVVKEQMCGILHVQALIELLNLGL 322