Pairwise Alignments

Query, 164 a.a., chemotaxis protein CheW from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 92.8 bits (229), Expect = 8e-24
 Identities = 54/147 (36%), Positives = 89/147 (60%), Gaps = 4/147 (2%)

Query: 14  SNDEVLQWVTFQLEEETYGINVMQVREVLRYTE-IAPVPGAPDYVLGIINLRGNVVTVID 72
           + D+  Q+V F+L  E YG+ +  V+E++R  E +  VP  PD++ G++NLRG V+ V+D
Sbjct: 379 TTDDEEQFVAFRLMNEEYGVPIDSVQEIVRVPEELTRVPKTPDFIEGVVNLRGVVLPVVD 438

Query: 73  TRSRFGLMQGEITDNTRIIVIESERQVIGILVDSVAEVVYLRSSEIDSTPSVGTDESSKF 132
            R RFGL   E  D  RI+V        G +VDSV+EV+ + +S I   P V +DE  + 
Sbjct: 439 QRRRFGLPGMERNDRQRIMVYTIRGVRTGFIVDSVSEVIRIPASLIGPAP-VLSDEQQRL 497

Query: 133 IQGVSN--RDGKLLILVDLNKFLTDEE 157
           I+ V+N  +  ++++L+D+ + L  +E
Sbjct: 498 IRRVANIEKQKRMILLLDVEQLLDGKE 524



 Score = 74.3 bits (181), Expect = 3e-18
 Identities = 41/139 (29%), Positives = 81/139 (58%), Gaps = 3/139 (2%)

Query: 20  QWVTFQLEEETYGINVMQVREVLRYTEIAPVPGAPDYVLGIINLRGNVVTVIDTRSRFGL 79
           Q+V F ++ + + + + +V+E++R  ++  VP +P  + G+ NLRG+V+ VI  R  FG+
Sbjct: 34  QFVIFHVDNDLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRHVFGM 93

Query: 80  MQGEITDNTRIIVIESERQVIGILVDSVAEVVYLRSSEIDSTPSVGTDESSKFIQGVSNR 139
                 D TR++V++  R V G++VD VA VV + +  I+ + ++G    +  + G+   
Sbjct: 94  APVVHDDATRVVVLDQGRPV-GLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLTGMIKG 152

Query: 140 DG--KLLILVDLNKFLTDE 156
           DG   +++++D  K +  E
Sbjct: 153 DGDRAMVMILDAAKVVARE 171



 Score = 63.9 bits (154), Expect = 4e-15
 Identities = 35/129 (27%), Positives = 73/129 (56%), Gaps = 7/129 (5%)

Query: 3   QANEVKVRKEKSNDEVLQWVTFQLEEETYGINVMQVREVLRYTE-IAPVPGAPDYVLGII 61
           +A + +V+     D+  Q V+F++  + Y + + +V+E+++    I  VP  P +VLG++
Sbjct: 189 RAEDGRVQAATDGDDESQLVSFEVAGQEYALPIERVQEIVQIPGLITDVPNTPAHVLGVM 248

Query: 62  NLRGNVVTVIDTRSRFGLMQGEITDNTRIIVIESE------RQVIGILVDSVAEVVYLRS 115
            LR  ++ ++  R  FGL    +T+  +I+V+  E       + +G+++DSV EV+ +  
Sbjct: 249 TLRNRLLPLVGLREMFGLPTLALTETNKIVVVSLEGGAGGSGRSVGVVMDSVKEVLRVGH 308

Query: 116 SEIDSTPSV 124
           + ID  P++
Sbjct: 309 ALIDPMPAL 317



 Score = 28.5 bits (62), Expect = 2e-04
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 6/67 (8%)

Query: 82  GEITDNTRIIVIESERQVIGILVDSVAEVVYLRSSEIDSTPSVGTDESSKFIQGVSNRDG 141
           G   D  + +      +  G+ +DSV E+V +   E+   P     ++  FI+GV N  G
Sbjct: 378 GTTDDEEQFVAFRLMNEEYGVPIDSVQEIVRV-PEELTRVP-----KTPDFIEGVVNLRG 431

Query: 142 KLLILVD 148
            +L +VD
Sbjct: 432 VVLPVVD 438