Pairwise Alignments

Query, 651 a.a., c-type cytochrome biogenesis protein CcmF from Vibrio cholerae E7946 ATCC 55056

Subject, 663 a.a., cytochrome c assembly protein (RefSeq) from Shewanella loihica PV-4

 Score =  438 bits (1126), Expect = e-127
 Identities = 255/649 (39%), Positives = 367/649 (56%), Gaps = 20/649 (3%)

Query: 1   MIAEIGHFALIVSLSLAILLSVLPLVGASRNNTLLMNTARPLAWGMFFLLSI-SFAVLLW 59
           M AEIG   LI+SL+L +L ++ P++ A     L +   +PL   +  L  + S  +L +
Sbjct: 13  MTAEIGLLLLIISLTLCLLTAMSPVMPAC-GVKLRLKPYQPLFIRLNSLAQVASLFILAY 71

Query: 60  AFYINDFTVQYVASNSNSELPWYYRLTAVWGAHEGSLLLWVLIQAAWTVAVASFSRGMPQ 119
            F  NDF+V YVA+NSN++L   Y+L AVWG HEGS+L W+     W+  V S       
Sbjct: 72  LFLSNDFSVAYVANNSNTQLASLYKLAAVWGGHEGSMLFWIGAMGIWS-CVLSLQPNHKD 130

Query: 120 ESVARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRDLNPLLQDPGLIIHPPMLYM 179
                + AV+G I  G + F+++ SNPF R LP  P++GRDLNP+LQD GLI+HPP+L++
Sbjct: 131 RFFHYLHAVLGAIQAGLIAFLLIGSNPFARLLPGIPVEGRDLNPILQDIGLILHPPLLFI 190

Query: 180 GYVGFSVAFSFAIASLMTGRLDTAW-ARWSRPWTTAAWLFLTLGIVLGSWWAYYELGWGG 238
           GYVG +V F+ AIA+L+          R  RPW   AW  LT G   GSWWAY ELGWGG
Sbjct: 191 GYVGLAVCFAAAIAALLDNSQPLKQHCRLMRPWAILAWAMLTGGNAFGSWWAYNELGWGG 250

Query: 239 WWFWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLLGTFLVRSGI 298
           WWFWDPVENASF+PWL  TALMHSL + E+R  F   ++ LAI  FSL LLGTFLVRSG+
Sbjct: 251 WWFWDPVENASFIPWLVATALMHSLILGERRDRFHGTSLFLAILGFSLCLLGTFLVRSGV 310

Query: 299 LVSVHAFASDPARG--MFILGFLIAVIGGSLLLFAIKGASVRVRGNFELVSRENSLLVNN 356
           + SVHAFA+DP RG  M  L  L+++ G +LLL  +      V  N  ++SRE+ + + N
Sbjct: 311 VQSVHAFAADPLRGGAMLTLFALVSICGFTLLLQRLPSLYRPVNSN--MLSRESLMQLGN 368

Query: 357 VLLMTALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMIPFAFFMGIGPLIRWKR 416
           +LL+ A   +L+G+  PL+++     S+S+GAP+FN LF  L       MG  PL+RW  
Sbjct: 369 LLLLVAAISILLGSCYPLLYEVASGQSISVGAPYFNSLFIPLTWLICLVMGAAPLMRW-- 426

Query: 417 DQISTLFKPMLITAMAS--LVLAALMMWLNAPTFSPMAYLGWVMAWWILLLHAYELHTRA 474
            Q+S       +TA+A+  L +   +  L    F+    LG     W+L      LH R 
Sbjct: 427 -QVSNPGMLRQLTALAAICLFIGLTLNTLLLKEFAAHFLLGSFACLWLLGCTGLYLHKRL 485

Query: 475 THRHRFIVGVKKLQRSHWAMMLGHVGLAVSIIGIAMVQNYSIERDVRLAPGDNFQLNEYN 534
                   G    +R  +AM   H+G+A+SI+G      +  E  +R+ PG   ++  Y 
Sbjct: 486 A----AYTGAGDNRRC-YAMSFAHLGVALSILGATCSSYFQQEELLRMGPGQGKEVAGYT 540

Query: 535 FYFQGVRDKDGPNYDGYIADFEITS-QGQYVNTLHAEKRFYRTAKSMMTEAAIDRGITRD 593
           F ++        +Y    A  E+   + Q++  L+ +++ + +    ++ A I R +  D
Sbjct: 541 FIYRATETVSHTSYSALQAKIEVRDRREQHLAYLYPQRQTFNSNAMQISAAGIHRSLFAD 600

Query: 594 LYIAMGERLDDNRSWAVRIYYKPYVRWIWAGGLLMAIGGALAISDKRYR 642
           LYI+MG RL +   + +RI YKP + WIW GGL+M   G   +  ++ R
Sbjct: 601 LYISMGNRLSE-EEFLIRISYKPLIGWIWIGGLIMMFAGLSLLLPRKVR 648