Pairwise Alignments

Query, 651 a.a., c-type cytochrome biogenesis protein CcmF from Vibrio cholerae E7946 ATCC 55056

Subject, 685 a.a., cytochrome c-type biogenesis protein CcmF (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  503 bits (1296), Expect = e-147
 Identities = 269/658 (40%), Positives = 395/658 (60%), Gaps = 25/658 (3%)

Query: 1   MIAEIGHFALIVSLSLAILLSVLPLVGASRNNTLLMNTARPLAWGMFFLLSISFAVLLWA 60
           MI EIGH  LI+S   A+L +   L+G+ + N  L+     L + +FF L  +   L+++
Sbjct: 1   MIPEIGHILLIMSTVFALLSAASHLIGSYQRNLYLIAFGNRLFYALFFTLLTALCSLVFS 60

Query: 61  FYINDFTVQYVASNSNSELPWYYRLTAVWGAHEGSLLLWVLIQAAWTVAV----ASFSRG 116
           F  +DF+V YVA++SNS+L   Y++ AVWG+HEGS+L WV   A W   +    A+ S  
Sbjct: 61  FIADDFSVAYVANHSNSQLALGYKVAAVWGSHEGSMLFWVFAIALWGAVINWRQATHSAK 120

Query: 117 MPQESV-------ARVLAVMGMITVGFLLFIILTSNPFLRTLPYFPIDGRDLNPLLQDPG 169
           +  E++        RVLA++ ++ +GF LF++ TSNPF R LP  P++GRDLNP+LQD G
Sbjct: 121 LDLENLQADKAYFGRVLAILALVILGFNLFLLFTSNPFARLLPNIPVEGRDLNPILQDIG 180

Query: 170 LIIHPPMLYMGYVGFSVAFSFAIASLMTGRLDTAWARWSRPWTTAAWLFLTLGIVLGSWW 229
           LI+HPPML++GYVG +V F+ A+ASL+ G+L      + RPW   AW+FLT G   GSWW
Sbjct: 181 LILHPPMLFLGYVGLTVCFAAALASLIGGKLPARHLDYLRPWVLLAWIFLTGGNAFGSWW 240

Query: 230 AYYELGWGGWWFWDPVENASFMPWLAGTALMHSLAVTEKRGTFKAWTVLLAISAFSLSLL 289
           AY ELGWGGWWFWDPVENASF+PWL  TAL+HSL +T K   F   T+ L + AFSLSLL
Sbjct: 241 AYNELGWGGWWFWDPVENASFIPWLVATALVHSLVLTRKTQGFTLTTLFLCLLAFSLSLL 300

Query: 290 GTFLVRSGILVSVHAFASDPARGMFILGFLIAVIGGSLLLFAIKGASVRVRGNFELVSRE 349
           G+FLVRSGI+ SVHAFA+DP RGM IL  L+  +G +LL+FA+K   +R   +F L S+E
Sbjct: 301 GSFLVRSGIVQSVHAFAADPTRGMSILSLLVIFVGAALLIFALKANLLRREIDFGLYSKE 360

Query: 350 NSLLVNNVLLMTALAVVLIGTLLPLVHKQLGLGSVSIGAPFFNMLFAWLMIPFAFFMGIG 409
             LL+  V+L+ A   VL+GT  PL+++ L LG++S+GAP+FN +F  L       MGI 
Sbjct: 361 TLLLLGIVILVVAAFSVLLGTFYPLIYELLNLGTLSVGAPYFNAIFVPLTFLVVLLMGIA 420

Query: 410 PLIRWKRDQISTLFKPMLITAMASLVLAALMMWLNAPTFSPMAYLGWVMAWWIL------ 463
           PL+ W+    +    P+L+     L +A  +    A   +    LG   A W++      
Sbjct: 421 PLVEWQNTSKAQAM-PILLFGFGVLAIAFWVSLQAASGSNLFLLLGTAAALWLIVCLLLT 479

Query: 464 LLHAYELHTRATHRH---RFIVGVKKLQRSHWAMMLGHVGLAVSIIGIAMVQNYSIERDV 520
           LL +  +  RA+         V  +  ++    MML H+G+A++IIG + V N+  E  +
Sbjct: 480 LLVSLSVRKRASTNQITANAPVKSRTSKQRFIGMMLAHLGVAITIIGASAVSNFEEEALL 539

Query: 521 RLAPGDNFQLNEYNFYFQGVRDKDGPNYDGYIADFEI---TSQGQYVNTLHAEKRFYRTA 577
           R+ PG    L  Y   ++   + +  ++    A+  I    +  + +  +  +++ +++ 
Sbjct: 540 RMGPGQGKPLAGYILVYESTENVETNSFTAIQANISIRDGANDEEILGYVRPQRQTFKSN 599

Query: 578 KSMMTEAAIDRGITRDLYIAMGERLDDNRSWAVRIYYKPYVRWIWAGGLLMAIGGALA 635
              M+ A ID G  RD+Y++MG +L D+  + +RI YKP   WIW G L M +GGA+A
Sbjct: 600 AMEMSHAGIDHGFWRDIYVSMGVQLSDS-EYLIRISYKPLATWIWLGALFMMLGGAIA 656