Pairwise Alignments

Query, 404 a.a., c-type cytochrome biogenesis protein CcmI from Vibrio cholerae E7946 ATCC 55056

Subject, 415 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (261), Expect = 3e-27
 Identities = 98/426 (23%), Positives = 184/426 (43%), Gaps = 33/426 (7%)

Query: 1   MWMFWISTLLLVAIAVVFVIIPFI--QKRANNDQA-LRDELNKAFYKDRLKELEEETEEG 57
           M  FWI   L++ I++  + IP    QK    ++A +R + N   + +RL  LE+E  E 
Sbjct: 1   MTTFWIFIALVMLISLTLIWIPHFRQQKLLRTEEAGVRKQTNLELFNERLATLEKELHEE 60

Query: 58  IV--ADQQDLIADLKQTLLDDIPTQQKHQQENRVSLWMVALPSVLLVVGLSYALYAKFGH 115
           ++  A+   L  +L+ +LL DI         N++    +  PSV+ V  ++ + Y     
Sbjct: 61  LLDQAEFDALKKELEISLLQDIKQASDDSLVNQIKPKSILWPSVMSVCLIAISGYL---- 116

Query: 116 YQHVQAWQQVSAQLPELSKKLMSPQAELSDEE-MNDLTLALRTRLHYQPDDVTGWLLLGR 174
           YQH+ A++ +       + +  +P A +   + M      +  ++  +P++   W  LG 
Sbjct: 117 YQHLGAFENIG------NTQAANPHAGMDTAQIMAQRVQMMEAQVQAEPENSQAWFSLGH 170

Query: 175 IGLANRDLETAIGAMKKAFALDNEDPDVKFGYAQALMLSNDPVDQQEAKSILLKLAQRGY 234
             ++    + A+ A  K   L  +  ++    A AL          + ++++ +      
Sbjct: 171 AYISANQFDKAVAAFDKVIDLVGKHAELIGPKATALYYKAGQQMTPQVQALIDESLALDP 230

Query: 235 ADLRVYSLLAFDAFESGDFPAAIKYWSLMQQAIGPDDARYEMLSRSIESARKRMG----- 289
            D     L+  DAF +  +  AI  W  +  +  PD  R  +++ +IE+A  R+      
Sbjct: 231 QDPSTLLLVGMDAFFTAKYQKAINSWQTILDSNRPDVDRAALMN-AIETANLRIQAETSG 289

Query: 290 --------EGMAEGQSVKVTINLGEQV--KVDPNAVLIVSIHAPGSP-MPVAAARYPLGE 338
                   +     +SV + I++  ++  K  P+  + V   A   P +P+AA +     
Sbjct: 290 MPNDDVHKQAKVTSKSVSIAISISPELAAKAGPDDTIFVFARATEGPKVPLAATKVSAKS 349

Query: 339 FPRTVVLDDNNSMMEGSKLSSLESYVVRVRIDSDGNVATKSGDWYAESPTMKTGEPVDVV 398
            P TV LDD+  M    KLS   S  V   +   GN+  ++GD   +   +  GE  ++V
Sbjct: 350 LPVTVTLDDSTGMGGDVKLSQTASVEVIAVLSKHGNIKPQAGDIQGKISKVNVGETANLV 409

Query: 399 LDKQYE 404
           LD Q +
Sbjct: 410 LDTQVQ 415