Pairwise Alignments

Query, 254 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 260 a.a., VacJ family lipoprotein (RefSeq) from Shewanella loihica PV-4

 Score =  203 bits (516), Expect = 3e-57
 Identities = 103/258 (39%), Positives = 152/258 (58%), Gaps = 16/258 (6%)

Query: 10  RLSWITLFTLFLVGCSSAPDDSSP--------------HSQVNDPLESFNRQMWTINYDY 55
           +  WI L  L +   + A  D+S               ++   DPLE FNR MW  NY +
Sbjct: 2   KCKWIALSLLLVGAQAMAQTDTSDERATDSTTAEVTIIYNDERDPLEGFNRAMWDFNYQF 61

Query: 56  LDPYVVRPVSLFYVGYVPKPVRSGIANFLSNLDEPASMVNNLLMGNGTKAVDHFNRFWIN 115
           LD Y  RPV+  Y   +P+PV++G+ NF+ N +EP+SMVNN L G    A +   RF IN
Sbjct: 62  LDKYFYRPVAHGYNDILPRPVKTGVNNFVLNFEEPSSMVNNALQGKWGWAANAGGRFTIN 121

Query: 116 TSFGLLGLIDIASEAGIKKYDDKAFSDAVGHYGVGNGPYLMVPGYGPYTVREV-TDVVDG 174
           T+ GLLG+ID+A   G+++  D+ F++ +G+YGV NGPY M P  GPY  RE+ +D VDG
Sbjct: 122 TTIGLLGVIDVADMMGLQRKQDE-FNEVLGYYGVPNGPYFMAPFLGPYVTRELASDWVDG 180

Query: 175 MYFPLAYLNIWAGVGKWALEGMETRAALVSQEALLQDSPDPYSLARDAYLQRQAFKAEIQ 234
           +YFPL+ L +W  + KW L+ +  RA+ + QE L+ ++ DPY+  ++AY Q   +K    
Sbjct: 181 LYFPLSELTMWQSLAKWGLKNLHRRASAIDQERLVDNALDPYTFVKEAYFQHLDYKVYDG 240

Query: 235 VDDYDPEEEEYLDEYLNE 252
                 +++E LDEY+ E
Sbjct: 241 DIPVSTDDDELLDEYMTE 258