Pairwise Alignments

Query, 254 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., vacJ lipoprotein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  207 bits (527), Expect = 2e-58
 Identities = 109/261 (41%), Positives = 156/261 (59%), Gaps = 13/261 (4%)

Query: 3   MELRMVGRLSWITLFTLFLVGCSSAPDDSSP----------HSQVNDPLESFNRQMWTIN 52
           M+L+ +G L    L    + G   A  D++P          +    DP E FNR MW  N
Sbjct: 1   MKLKWIGVLLGCALLPK-VYGAEVAVPDTTPKDTASAVKITYEDPRDPFEGFNRVMWDFN 59

Query: 53  YDYLDPYVVRPVSLFYVGYVPKPVRSGIANFLSNLDEPASMVNNLLMGNGTKAVDHFNRF 112
           Y YLD Y+ RPV+  Y  Y+P P + G+ NFL NL+EP+S+VNNLL G    A +   RF
Sbjct: 60  YLYLDRYLYRPVAHGYNDYIPLPAKMGVNNFLQNLEEPSSVVNNLLQGKWGWAANAGGRF 119

Query: 113 WINTSFGLLGLIDIASEAGIKKYDDKAFSDAVGHYGVGNGPYLMVPGYGPYTVREV-TDV 171
            +NT+ GLLG+ID+A   G+ +  D+ F++ +G+YGV NGPY M P  GPY VRE+ +D 
Sbjct: 120 TVNTTIGLLGVIDVADMMGMTRKQDE-FNEVLGYYGVPNGPYFMAPFAGPYIVRELASDW 178

Query: 172 VDGMYFPLAYLNIWAGVGKWALEGMETRAALVSQEALLQDSPDPYSLARDAYLQRQAFKA 231
           VDG+YFPL+ L +W  V KW L+ +  RA+ + QE L+ ++ DPY+  +DAY+Q   +K 
Sbjct: 179 VDGLYFPLSELTMWQSVLKWGLKSLHARASAIDQERLVDNALDPYAFVKDAYIQHMDYKV 238

Query: 232 EIQVDDYDPEEEEYLDEYLNE 252
                    E++E LD+Y+ E
Sbjct: 239 YDGNVPQKQEDDELLDQYMQE 259