Pairwise Alignments

Query, 254 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., vacJ lipoprotein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  110 bits (274), Expect = 4e-29
 Identities = 78/219 (35%), Positives = 113/219 (51%), Gaps = 20/219 (9%)

Query: 28  PDDSSPHSQVNDPLESFNRQMWTINYDYLDPYVVRPVSLFYVGYVPKPVRSGIANFLSNL 87
           P D++   + +DPLE++NR+M+  N   LD YV  PV   Y   VP+P R+GI N   N+
Sbjct: 82  PRDAATQVERDDPLEAYNRRMYAFNAR-LDRYVFLPVVDLYETVVPQPFRNGIGNVFDNV 140

Query: 88  DEPASMVNNLLMGNGTKAVDHFNRFWINTSFGLLGLIDIASEAGIKKYDDKAFSDAVGHY 147
            E  +  N LL G   K+     RF +NT+FGLLGL D+A  AG+   D+  F   +G +
Sbjct: 141 GEIPTFANCLLQGRFDKSAITLGRFALNTTFGLLGLFDVAEGAGLYAQDED-FGQTLGVW 199

Query: 148 GVGNGPYLMVPGYGPYTVREVTDVVDGMYFPLAYL----------NIWAGVGKW---ALE 194
           GV  GPY+++P  GP TVR+         F L Y+          N  A   +W   ALE
Sbjct: 200 GVPAGPYVILPVLGPSTVRDTAGYAGD--FGLRYMVYDTLYEETGNADATALRWGVTALE 257

Query: 195 GMETRAALVSQEALLQDSPDPYSLARDAYLQRQAFKAEI 233
            ++TR+  +        +P  Y   R  YL+++  KA+I
Sbjct: 258 AVDTRSR-IPLRYYDAGTPFEYEWLRFLYLEKR--KADI 293