Pairwise Alignments

Query, 254 a.a., ABC transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 261 a.a., VacJ family lipoprotein (RefSeq) from Shewanella sp. ANA-3

 Score =  205 bits (521), Expect = 9e-58
 Identities = 98/215 (45%), Positives = 139/215 (64%), Gaps = 2/215 (0%)

Query: 39  DPLESFNRQMWTINYDYLDPYVVRPVSLFYVGYVPKPVRSGIANFLSNLDEPASMVNNLL 98
           DP E FNR MW  NY YLD Y+ RPV+  Y  Y+P P ++GI NF+ NL+EP+S+VNN L
Sbjct: 46  DPFEGFNRAMWDFNYLYLDRYIYRPVAHGYNDYLPLPAKTGINNFVQNLEEPSSLVNNAL 105

Query: 99  MGNGTKAVDHFNRFWINTSFGLLGLIDIASEAGIKKYDDKAFSDAVGHYGVGNGPYLMVP 158
            G    A +   RF +NT+ GLLG+ D+A   G+ +  D+ F++ +G+YGV NGPY M P
Sbjct: 106 QGKWGWAANAGGRFTVNTTIGLLGVFDVADMMGMPRKQDE-FNEVLGYYGVPNGPYFMAP 164

Query: 159 GYGPYTVREV-TDVVDGMYFPLAYLNIWAGVGKWALEGMETRAALVSQEALLQDSPDPYS 217
             GPY VRE+ +D VDG+YFPL+ L +W  + KW L+ +  RA+ + QE L+ ++ DPY+
Sbjct: 165 FAGPYVVRELASDWVDGLYFPLSELTVWQSIVKWGLKSLHARASAIDQERLVDNALDPYT 224

Query: 218 LARDAYLQRQAFKAEIQVDDYDPEEEEYLDEYLNE 252
             +DAYLQ   +K          E++E LD+Y+ E
Sbjct: 225 FVKDAYLQHMDYKVYDGNVPQKQEDDELLDQYMQE 259