Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 655 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

 Score =  427 bits (1097), Expect = e-123
 Identities = 247/642 (38%), Positives = 357/642 (55%), Gaps = 17/642 (2%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           RLF+ EKPS  R IA  L    + + GC+       VTWCIGHLLE   P+AY ++YK W
Sbjct: 2   RLFLCEKPSQGRDIAKVLGASRRGD-GCL-IGRETTVTWCIGHLLETAPPEAYGDQYKTW 59

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
           ++  LPIIP QW++  +  +  Q  +++ LL EAT ++ A D DREG+++  E+++ C  
Sbjct: 60  SLDHLPIIPAQWRVEVKPKTVAQFKIIKHLLSEATTVVIATDADREGEMIARELLEICNY 119

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
               + +V+RL +S LN +++++AL  L+S++E  PL  SALARSRADWL GMN+SR +T
Sbjct: 120 ----RGSVERLWLSALNEASIRKALSSLKSSQETFPLYHSALARSRADWLIGMNLSRLFT 175

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           LLG++AGY GVLSVGRVQTP L LVV RD  I  F+   Y+ +D  +    G  +    A
Sbjct: 176 LLGRRAGYDGVLSVGRVQTPTLRLVVERDRAIASFVSVPYWVVDVHLSSM-GQPFI---A 231

Query: 243 RWKPSEACLPWQDEEGRVTNRKLVDNVASRIAN-QPATVTESEQDQTKQAAPLPYSLSAL 301
            W P  +    +DE GR   + L       +++ + ATV   + +  ++A PLP+ LS L
Sbjct: 232 SWIPPNS---GRDEAGRCLQQALASQTLQALSSSKTATVVSLQTEHLREAPPLPFDLSTL 288

Query: 302 QIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQE 361
           Q   +++    AQ+ L+  Q+LYE HK  +YPRSDCRYLP+    +   V  A+      
Sbjct: 289 QEVCSRKLGLGAQETLNNAQALYETHKATSYPRSDCRYLPESMFNEVAAVFDALLRMDPA 348

Query: 362 MVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFY 421
           +  A+   D SLRS+AWND+K+ AHHAIIPT + A++  +S  E +VY+LI   YL QF 
Sbjct: 349 LRPALGGVDQSLRSRAWNDAKITAHHAIIPTTEPANLGRMSEQERQVYELIRSHYLAQFL 408

Query: 422 PAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDK---VPPLPVGIVL 478
           P   +   ++          A G+Q+L  GWK L     + +E   K   +P L  G   
Sbjct: 409 PHHEFDRTEVELECGAERLTAVGKQILVQGWKGLLSDNPDDDEPSQKSQVLPALQQGRQC 468

Query: 479 QCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGILD 538
              + E+K  +T  P+  TE  L++AM  +A+ V D  LK+ LR+T G+GTEATRAGI+ 
Sbjct: 469 AVDDVELKSMRTAAPKPLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIK 528

Query: 539 TLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFMQ 598
            L  RG L +  + + ++ A   LI A+P+    P MTA WE  L  I         F+ 
Sbjct: 529 GLIDRGYLLKKKRALTASAAAHTLIEAVPAAVADPGMTAIWEQALDEIEAGRLTLDTFVA 588

Query: 599 TLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKS 640
                + QLI       + V ++A P          RR  KS
Sbjct: 589 KQAHWITQLISNCGALTLSVPVEAGPVCPLCNASMLRRKGKS 630