Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., DNA topoisomerase I (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  102 bits (254), Expect = 7e-26
 Identities = 135/528 (25%), Positives = 221/528 (41%), Gaps = 54/528 (10%)

Query: 89  VRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ 148
           +R+L K+A  I  A D DREG+ +   + +      S+    +R++ +++   A++ A  
Sbjct: 103 LRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDSR---YKRVVFNEITKKAIQEAFS 159

Query: 149 GLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVV 208
             +     I    +  AR   D + G  +S    LL  K      LS GRVQ+  + LVV
Sbjct: 160 --QPGELDIDRVNAQQARRFLDRVVGYMVS---PLLWAKIARG--LSAGRVQSVAVKLVV 212

Query: 209 RRDEEIEHFIPHDYFTLDALIPYQNG-TEYFDIRARWKPSEACLPWQDEEGRVTNRKLVD 267
            R+ EI  FIP +Y+ + A +    G T  FD+ AR K  EA  P  + +      KL  
Sbjct: 213 EREREIRAFIPEEYWEVHADLGTAKGATVRFDV-AREK-GEAFKPLNEAQAMAALEKLKA 270

Query: 268 NVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKH 327
           +  S        + + E   T      P+  S LQ  A+ R  F  ++ + + Q LYE  
Sbjct: 271 SSYS--------IVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA- 321

Query: 328 KLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHH 387
             ITY R+D   L  + +A A   + +           + D      SK   +   +AH 
Sbjct: 322 GYITYMRTDSTNLSADAVAMARTYIESEFGKKY-----LPDTPNVYSSK---EGAQEAHE 373

Query: 388 AIIPTPKKASVNALSGHEM---KVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKG 444
           AI P+      + LSG E    ++Y+LI RQ+L      A Y    +          AKG
Sbjct: 374 AIRPSDANTEPSKLSGMERDAERLYELIWRQFLACQMLPAQYLSTTVSVGAGDFELRAKG 433

Query: 445 RQLLSAGWKVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQA 504
           R L   G+  +  Q  +  +  D +P +  G V++  + +  Q  T+PP  ++EA+L++ 
Sbjct: 434 RILKFDGYTRVMPQITKPGD-DDVLPDMAQGDVMKLIKLDPTQHFTKPPARYSEASLVKE 492

Query: 505 MTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIH 564
           M                 E  G+G  +T A I+ T+  RG +   N+   S   G  +  
Sbjct: 493 M-----------------EKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTE 535

Query: 565 ALP---SEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIE 609
            L    S       TA  E  L  +A+  + ++  +    G  ++ +E
Sbjct: 536 RLSESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFKKKLE 583