Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 648 a.a., DNA topoisomerase III (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  429 bits (1104), Expect = e-124
 Identities = 247/659 (37%), Positives = 371/659 (56%), Gaps = 34/659 (5%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           +L++ EKPS A+ IA  L    + + GC     G  VTWCIGHLLE   PDAYD RYK+W
Sbjct: 2   QLYLCEKPSQAKDIAAVLGATRRGD-GCW-LGPGITVTWCIGHLLETAPPDAYDARYKRW 59

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
            + DLPI+P QW++  +  ++ Q   V++LL EA +++ A D DREG+++  E++++C+ 
Sbjct: 60  VLTDLPIVPAQWKMTVKPKTASQYKAVKRLLGEAKELVIATDADREGEMIARELVEHCRY 119

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
               +  ++RL +S L+ +++++AL  L+   E   L  SAL RSRADWL GMNMSR +T
Sbjct: 120 ----RGPIRRLWLSALDEASIRKALAALKPGAETFNLYHSALGRSRADWLIGMNMSRLFT 175

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           LLG+++GYQGVL VGRVQTP L LVV RD  I  F+P  Y+ +D  + ++         A
Sbjct: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQLSHEG----MAFTA 231

Query: 243 RWKPS-EACLPWQDEEGRVTNRKLVDNVASRIANQPATVT-ESEQDQTKQAAPLPYSLSA 300
           +W+   +AC    D++ R  N+ L  + A  + N     T +   ++ ++AAPLP+ L  
Sbjct: 232 QWRADPDAC----DDQERCLNQALARDAAQAMRNAATARTLKVRTERLREAAPLPFDLGT 287

Query: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
           LQ   +K+    AQ+ LD+ QSLYE +KLITYPRSDC +LP    ++AP ++AA+A    
Sbjct: 288 LQEVCSKKLGLGAQETLDIAQSLYETYKLITYPRSDCGFLPLSQHSEAPAILAALAQADP 347

Query: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420
            +           +S+AWND+KV AHH IIPT    +++ L+G +  VY LI  +YL QF
Sbjct: 348 SLAPLREHLQPQRKSRAWNDAKVSAHHGIIPTAAAKNLDKLAGKQRAVYTLIRARYLAQF 407

Query: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK-----VLTGQQDEQEECVDKVPPLPVG 475
            P   Y   +  F+ AG    A G+Q++  GWK      L   +  +      +P L  G
Sbjct: 408 LPNHEYDRTQADFDCAGQALRAVGKQIVEPGWKRALPEALAPAKGREAPAPQTLPALAEG 467

Query: 476 IVLQCREGEIKQRQ--TEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATR 533
               C   E+K +   T+PP+ FTE  L++AM  +A+ V D  LK+ L++T G+GTEATR
Sbjct: 468 --RDCTVDEVKPKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATR 525

Query: 534 AGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAY 593
           A I+  L  RG L ++ K + +TPA   LI A+P     P  TA WE  L  +     + 
Sbjct: 526 ASIIQGLLDRGYLVKNGKALSATPAAFSLIDAVPRAIADPGTTAIWEQALDMVQSGEMSL 585

Query: 594 QPFMQTLQGRLEQLIEQVQVAPVPVSLQALPA---------VSKPAFKRTRRAPKSKAR 643
           + F+      + + + + Q   + +S  A PA           KPA ++   AP+  ++
Sbjct: 586 EEFVTRQAAWMSKHVARCQGMSLTISGPASPAGRGATPWKNKRKPAKRKAAGAPRKASK 644