Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

 Score =  103 bits (256), Expect = 4e-26
 Identities = 144/579 (24%), Positives = 244/579 (42%), Gaps = 79/579 (13%)

Query: 57  ERYKKWNMADLPIIPE-----QWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQL 111
           E+ K+  +  + + PE     ++++ P K   + +  +R+L KEA  I  A D DREG+ 
Sbjct: 65  EKAKRQLITRMGVDPEHGWKAKYEILPGKE--KVIEELRRLAKEADTIYLATDLDREGEA 122

Query: 112 LVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ---GLRSNREFIPLSVSAL-ARS 167
           +   + +      S+    +R++ +++   A++ A      L  NR      V+A  AR 
Sbjct: 123 IAWHLRESIGGDDSR---YKRVVFNEITKKAIQEAFSKPGDLDLNR------VNAQQARR 173

Query: 168 RADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDA 227
             D + G  +S    LL  K      LS GRVQ+  + LVV R+ EI  F+P +Y+ + A
Sbjct: 174 FLDRVVGYMVS---PLLWAKIARG--LSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHA 228

Query: 228 -LIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQD 286
            L   Q     F++    +  EA  P  + +      KL             +V++ E  
Sbjct: 229 DLASAQQAKVRFEVAR--ENGEAFKPLNEAQANAALEKL--------KGAKYSVSKREDK 278

Query: 287 QTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLA 346
            T      P+  S LQ  A+ R  F  ++ + + Q LYE    ITY R+D   L  + + 
Sbjct: 279 PTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNLSADAIG 337

Query: 347 QAPDVVAAIANNAQEMVTAVNDADLSLRSKAWN--DSKVDAHHAIIPTPKKASVNALSGH 404
                +               D  L  +   ++  +   +AH AI P+        LSG 
Sbjct: 338 MVRGFIEG----------EFGDKYLPEKPNVYSSKEGAQEAHEAIRPSDVNLRPTQLSGM 387

Query: 405 EM---KVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIF--IAKGRQLLSAGWKVLTGQQ 459
           E    ++Y+LI RQ++    P A Y    +   +A G F   AKGR L   G+  +  QQ
Sbjct: 388 ERDAERLYELIWRQFVACQMPPAQYLSTSV--TVAAGDFELRAKGRILKFDGYTKVMPQQ 445

Query: 460 DEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKK 519
            +  E  D +P +  G  ++  + +  Q  T+PP  ++EA+L++ M              
Sbjct: 446 SKAGE-DDVLPEMNKGDDMKLLKLDPSQHFTKPPARYSEASLVKEM-------------- 490

Query: 520 ILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDM---- 575
              E  G+G  +T A I+ T+  RG +   N+   S   G  +   L SE+    M    
Sbjct: 491 ---EKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERL-SESFNNLMDYGF 546

Query: 576 TAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVA 614
           TA  E  L  +A+  + ++  +    G   + +E  + +
Sbjct: 547 TAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAEAS 585