Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 646 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Pseudomonas stutzeri RCH2

 Score =  451 bits (1160), Expect = e-131
 Identities = 257/654 (39%), Positives = 379/654 (57%), Gaps = 24/654 (3%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           +L++ EKPS AR IA  L   +++  GC++ A G  VTWCIGHLLE   PDAYD RYK+W
Sbjct: 2   QLYLCEKPSQARDIAKVLGA-NRRGDGCLQGA-GVTVTWCIGHLLETAPPDAYDPRYKRW 59

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
            +ADLPI+PE+W++  +  ++ Q   V++LL E ++++ A D DREG+++  E++++C+ 
Sbjct: 60  VLADLPIVPERWKMLVKPKTASQFKAVKRLLGECSELVIATDADREGEMIARELVEHCRY 119

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
               +  ++RL +S L+ +++++AL  L+   E   L  +AL RSRADWL GMNMSR +T
Sbjct: 120 ----RGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALGRSRADWLIGMNMSRLFT 175

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           LLG+++GYQGVL VGRVQTP L LVV RD  I  FIP  ++ +D  +   +GT +    A
Sbjct: 176 LLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAIDVQL-LADGTAF---TA 231

Query: 243 RWK-PSEACLPWQDEEGRVTNRKLVDNVASRIANQP-ATVTESEQDQTKQAAPLPYSLSA 300
           +W+ P + C    D++GR  ++      A  + N   A + + + ++ ++AAPLP+ L  
Sbjct: 232 QWQAPDDYC----DDQGRCLDQARAQQAAEAMRNAACARLLKLKTERQREAAPLPFDLGT 287

Query: 301 LQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQ 360
           LQ   +K+    AQ+ LD+ Q+LYE HKLITYPRSDC YLP     +A  +VAA+A +  
Sbjct: 288 LQEVCSKKLGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEARAIVAALAQSDP 347

Query: 361 EMVTAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420
            +       DLS RS+AWND+KV AHH IIPT     +  LSG    VY+LI  +YL QF
Sbjct: 348 TLAALEPHLDLSRRSRAWNDAKVGAHHGIIPTAAVRGLERLSGRPRAVYELIRARYLAQF 407

Query: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWK------VLTGQQDEQEECVDKVPPLPV 474
            P   Y   +  F+ AG    A G++++  GWK      +   + + +      +P L  
Sbjct: 408 LPNHEYDRTQADFDCAGQALRAVGKRIVEPGWKRAMPEALAPARGNREAPAPQSLPTLQQ 467

Query: 475 GIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRA 534
           G      E  +K +QT PP+ FTE  L++AM  +A+ V D  LK+ L++T G+GTEATRA
Sbjct: 468 GQDYAVGEINLKDQQTHPPKPFTEGDLIKAMKNVAKLVDDPRLKQKLKDTTGIGTEATRA 527

Query: 535 GILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQ 594
           GI+  L  RG L R  K + +TPA   LI A+P     P  TA WE  L  +       +
Sbjct: 528 GIIQGLLDRGYLLRQGKALAATPAAFSLIDAVPRPIADPGTTAIWEQALDMVQSGEMPLE 587

Query: 595 PFMQTLQGRLEQLIEQVQVAPVPVSLQALPA--VSKPAFKRTRRAPKSKARTYK 646
            F+      + +L+E+     + +S   + A    KP  K+   AP+  AR  K
Sbjct: 588 EFVAKQSAWMSKLVERCAGLRMTISGPPVAAGRGGKPWKKKRSAAPRKPARRRK 641