Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 870 a.a., DNA topoisomerase I from Pseudomonas syringae pv. syringae B728a

 Score = 99.0 bits (245), Expect = 8e-25
 Identities = 129/532 (24%), Positives = 218/532 (40%), Gaps = 52/532 (9%)

Query: 89  VRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ 148
           +RKL K+A  I  A D DREG+ +   + +      S+    +R++ +++   A++ A  
Sbjct: 103 LRKLAKDADIIYLATDLDREGEAIAWHLREAIGGDDSR---YKRVVFNEITKKAIQEAFS 159

Query: 149 GLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVV 208
             +     I    +  AR   D + G  +S    LL +K      LS GRVQ+  + LVV
Sbjct: 160 --KPGELDIARVNAQQARRFLDRVVGYMVS---PLLWQKVARG--LSAGRVQSVAVKLVV 212

Query: 209 RRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVDN 268
            R+ EI  F P +Y+ + A +    G       AR +  EA  P  + +      KL  +
Sbjct: 213 EREREIRAFNPEEYWEIHADLGTAKGANVRFEVAR-ENGEAFKPLNETQAMAALEKLKAS 271

Query: 269 VASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHK 328
             S        + + E   T      P+  S LQ  A+ R  F  ++ + + Q LYE   
Sbjct: 272 SYS--------IVKREDKPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-G 322

Query: 329 LITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHA 388
            ITY R+D   L  + ++ A D +             + ++     SK   +   +AH A
Sbjct: 323 YITYMRTDSTNLSADAVSMARDYIGTEFGKKY-----LPESPNVYSSK---EGAQEAHEA 374

Query: 389 IIPTPKKASVNALSGHEM---KVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGR 445
           I P+      + L+G E    ++Y+LI RQ++      A Y    +    +     AKGR
Sbjct: 375 IRPSDVNTHPSKLTGMERDAERLYELIWRQFVACQMLPAQYLSTTVTVAASDFELRAKGR 434

Query: 446 QLLSAGWKVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAM 505
            L   G+     Q  +  +  D +P +  G  L+  + +  Q  T+PP  ++EA+L++ M
Sbjct: 435 ILKFDGYTRALPQMAKPGD-DDVLPDMAQGETLKLNKLDPSQHFTKPPARYSEASLVKEM 493

Query: 506 TGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAG---RGL 562
                            E  G+G  +T A I+ T+  RG +   N+   S   G    G 
Sbjct: 494 -----------------EKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGR 536

Query: 563 IHALPSEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQVA 614
           +    S       TA  E  L  +A+  + ++  +    G   + +E  + A
Sbjct: 537 LSESFSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFRKKLEVAEAA 588