Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 673 a.a., DNA topoisomerase III from Pseudomonas syringae pv. syringae B728a

 Score =  422 bits (1085), Expect = e-122
 Identities = 247/646 (38%), Positives = 365/646 (56%), Gaps = 22/646 (3%)

Query: 3   RLFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKW 62
           RL++ EKPS  + IA  L    + + GCI+  NG  VTW IGHLLE   PDAY E  K W
Sbjct: 2   RLYLCEKPSQGKDIAAVLGAKTRGD-GCIK-GNGVAVTWGIGHLLETAPPDAYGEHLKNW 59

Query: 63  NMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKV 122
           ++  LPI+P +W++  +  ++ Q  +V++LLK+AT+++ A D DREG+++  E+I+YC  
Sbjct: 60  SLDTLPILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYC-- 117

Query: 123 PKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYT 182
               +  +QRL +S LN +++++AL  ++   E  PL +SALARSRADWL GMN SR +T
Sbjct: 118 --GYRGPIQRLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFT 175

Query: 183 LLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRA 242
           LLG++AGY GVLSVGRVQTP L LVV RD +I +FIP  +++++     Q  T      A
Sbjct: 176 LLGRQAGYTGVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEV----QLWTAGQSFLA 231

Query: 243 RWKPSEACLPWQDEEGRVTNR-KLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSAL 301
           +W   E  +   DEEGR  ++      +A+  ++Q A+    +  + K  APLP+ LS L
Sbjct: 232 KWVADEYLV---DEEGRCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTL 288

Query: 302 QIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQE 361
           Q   + ++    Q+ LD+ QSLYE HK  TYPR+DC YLP+    + P V+ A+      
Sbjct: 289 QEVCSAKFGMGVQETLDVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPS 348

Query: 362 MVTAVNDADLSLRSKAWNDSKVDA-HHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQF 420
           +   +   D   RS+AWND K+   HH IIPT + A+++A+S  E KVY+LI   +L QF
Sbjct: 349 IGKTLQLIDPEQRSRAWNDKKITGPHHGIIPTLEPANLSAMSEKERKVYELIRAHFLAQF 408

Query: 421 YPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVLTGQQDEQEECVDK------VPPLPV 474
            P   Y      F     +  A G++++  GWKVL     E EE  D       +P L +
Sbjct: 409 LPTHEYDRTVATFECNAVLLQAVGKRIVIPGWKVLFSASSE-EEANDSGGRSQILPVLQI 467

Query: 475 GIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRA 534
           G     ++  +K  +TEPP+ +TE TL++AM  IA+ V D  L + L+ET G+GTEATRA
Sbjct: 468 GTRCDVQDLHLKSLKTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRA 527

Query: 535 GILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQAYQ 594
           G +  L  RG L +    +++T A   LI A+P     P  TA WE  L  I +      
Sbjct: 528 GTIQGLIDRGSLIKKGSALRATEAAFSLIDAVPPAVADPGTTAIWEQALTMIEQGTLTLD 587

Query: 595 PFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKS 640
            F+      + +L+EQ +   + + +   P     + K ++R   S
Sbjct: 588 DFIARQSSWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSS 633