Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 883 a.a., DNA topoisomerase I from Synechococcus elongatus PCC 7942

 Score =  123 bits (308), Expect = 4e-32
 Identities = 159/662 (24%), Positives = 279/662 (42%), Gaps = 91/662 (13%)

Query: 1   MTRLFIAEKPSLARAIADALPKPHKKE--QGCIRC---ANGDIVTWCIGHLLEQVEPDAY 55
           M +L I E P+ AR I + LPK ++ E   G +R    +  DI T   G     +  D  
Sbjct: 1   MPKLVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQSASDIPTELKGEKWSNLGVDVE 60

Query: 56  DERYKKWNMADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDE 115
           +      N A L I+P        K   + +  ++  LK+A ++I A D DREG+ +   
Sbjct: 61  N------NFAPLYIVP--------KDKKKIVKTLKDALKDADELILATDEDREGESISWH 106

Query: 116 VIDYCKVPKSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGM 175
           ++   +     +   +R++  ++   A++ AL+  R   +   L  +   R   D L G 
Sbjct: 107 LLQLLQ----PRVPTKRMVFHEITQEAIQAALKNCRDVDQ--RLVHAQETRRILDRLVGY 160

Query: 176 NMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGT 235
            +S    LL KK  +   LS GRVQ+  + L+V+R+     F    Y+ L A +  + G 
Sbjct: 161 TLS---PLLWKKIAWG--LSAGRVQSVAVRLLVQRERARRAFRQGSYWDLKAQLTVEAGQ 215

Query: 236 EYFDIRARWKPSEACLPWQDEE--------GR---VTNRKLVDNVASRIANQPATVTESE 284
             F+ +      +      D +        GR   + +++  + +  R+  QP  V   E
Sbjct: 216 --FEAKLWTLAGQRLATGNDFDESTGQIIAGRQVCLLDQQEAEALRDRLQTQPWQVKSLE 273

Query: 285 QDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEH 344
           +  T +    P++ S LQ ++ ++   SA++ + + QSLYE+   ITY R+D  +L ++ 
Sbjct: 274 EKPTTRKPAPPFTTSTLQQESNRKLRLSARETMRVAQSLYER-GFITYMRTDSVHLSQQA 332

Query: 345 LAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHHAIIP---TPKKASVNAL 401
           +  A   V  +     +   +      + +SK    +  +AH AI P   T +      L
Sbjct: 333 IEAARSCVEQMYG---KNYLSPQPRQFTTKSK----NAQEAHEAIRPAGNTFRLPQETGL 385

Query: 402 SGHEMKVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIFIAKGRQLLSAGW--KVLTGQQ 459
           SG E  +Y LI ++ +      A      ++  +    F A G+++   G+    + G  
Sbjct: 386 SGAEFALYDLIWKRTIASQMAEARQTMLSVLLEVDNAEFRASGKRIDFPGFFRAYVEGSD 445

Query: 460 DEQEECVDK---VPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKE 516
           D      D+   +P L VG    C+E      +T+PP  +TEA+L++ +           
Sbjct: 446 DPDAALEDREILLPALKVGDRPTCQELAAIGHETQPPARYTEASLVKML----------- 494

Query: 517 LKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDM- 575
                 E +G+G  +T A I+ T+  RG  Q  +  +  TP           E  +PD+ 
Sbjct: 495 ------ENEGIGRPSTYASIIGTIVDRGYAQLVSNTL--TPTFTAFAVTALLEQHFPDLV 546

Query: 576 ----TAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQV--------APVPVSLQAL 623
               +A  E  L  I+     + P++         L EQV++        A   V+L+ L
Sbjct: 547 DTSFSARMEQSLDDISNGEVDWLPYLSQFYRGDRGLEEQVKLRESEIDPAAARTVALEGL 606

Query: 624 PA 625
           PA
Sbjct: 607 PA 608