Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 900 a.a., DNA topoisomerase I from Sinorhizobium meliloti 1021

 Score =  107 bits (266), Expect = 3e-27
 Identities = 141/533 (26%), Positives = 227/533 (42%), Gaps = 64/533 (12%)

Query: 81  SSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKS-KKETVQRLLISDLN 139
           +S++++  +   +K +  +I A DPDREG+ +   V+D  +  K    + V+R++ + + 
Sbjct: 63  ASAKRMKDIADAVKSSDGLILATDPDREGEAISWHVLDLLRKKKVIGDKPVKRVVFNAIT 122

Query: 140 LSAVKRALQGLRSNREFIPLSVSA-LARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGR 198
             AV   L  +   R+     V A LAR   D+L G N+S    +L +K    G  S GR
Sbjct: 123 KKAV---LDAMAEPRDIDASLVDAYLARRALDYLVGFNLS---PVLWRKL--PGARSAGR 174

Query: 199 VQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRARWKPSEACLPWQDEEG 258
           VQ+  L LV  R+ EIE F+  +Y+ + AL+    G E F+ R      +   P     G
Sbjct: 175 VQSVALRLVCDREAEIERFVTEEYWNISALLKTPRGDE-FEARLVSADGKRLPPKAIGNG 233

Query: 259 RVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLD 318
              NR     + S +      V   E    K+    P++ S LQ  A+ +  FSA + + 
Sbjct: 234 EEANR-----LKSLLDGASYVVESVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQ 288

Query: 319 LCQSLY-------EKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADL 371
           + Q LY       E   LITY R+D   +  E +  A     AI +   E          
Sbjct: 289 VAQKLYEGVDIGGETVGLITYMRTDGVQMAPEAIEAARQ---AIGSQFGERYLPEKPRFY 345

Query: 372 SLRSKAWNDSKVDAHHAIIPTPKKASVNA----LSGHEMKVYQLI-ARQYLMQFYPAAI- 425
           S ++K    +  +AH AI PT    + +     L G  +++Y L+  R    Q   A I 
Sbjct: 346 STKAK----NAQEAHEAIRPTDFDRTPDQVRRFLDGDMLRLYDLVWKRGIASQMASAEIE 401

Query: 426 YAEAKLVFNIAG--GIFIAKGRQLLSAGW-KVLTGQQDEQEECVD-----KVPPLPVGIV 477
              A++V + AG      A G  +   G+    T  +++ E+  D     ++P +     
Sbjct: 402 RTTAEIVADNAGKKAGLRATGSVIRFDGFIAAYTDMKEDGEQADDGDEDGRLPEINAREN 461

Query: 478 LQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEATRAGIL 537
           L  ++    Q  TEPP  ++EATL++ M                 E  G+G  +T A  +
Sbjct: 462 LAKQKINASQHFTEPPPRYSEATLIKKM-----------------EELGIGRPSTYAATV 504

Query: 538 DTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEAT---YPDMTAHWEHQLQAIA 587
            TL  R  ++ D + +     GR +   L S  T     D TA  E +L  I+
Sbjct: 505 TTLIDRDYVEIDKRKLVPQAKGRLVTAFLESFFTRYVEYDFTASLEEKLDQIS 557