Pairwise Alignments

Query, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

Subject, 694 a.a., DNA topoisomerase III (RefSeq) from Shewanella amazonensis SB2B

 Score =  702 bits (1812), Expect = 0.0
 Identities = 367/651 (56%), Positives = 462/651 (70%), Gaps = 16/651 (2%)

Query: 4   LFIAEKPSLARAIADALPKPHKKEQGCIRCANGDIVTWCIGHLLEQVEPDAYDERYKKWN 63
           L+IAEKPSL RAIA+ LPKPHKK +G I   NGD VTWCIGHLLEQ EPDAY   YK+W 
Sbjct: 27  LYIAEKPSLGRAIAEVLPKPHKKGEGYIELGNGDCVTWCIGHLLEQAEPDAYSPEYKQWQ 86

Query: 64  MADLPIIPEQWQLRPRKSSSQQLTVVRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVP 123
           +A LPIIP +W+L PR S+  QL VV++L+K+A+ ++HAGDPDREGQLLVDEVI + KV 
Sbjct: 87  LAHLPIIPAEWKLTPRSSAKSQLAVVKRLIKQASSLVHAGDPDREGQLLVDEVISHAKVS 146

Query: 124 KSKKETVQRLLISDLNLSAVKRALQGLRSNREFIPLSVSALARSRADWLYGMNMSRAYTL 183
            SK  + QRLLISDLN  AV+RAL  LRSN+EF+PL+ SALARSRADWLYG+NM+RAYTL
Sbjct: 147 ASKLASTQRLLISDLNPDAVRRALGQLRSNKEFVPLATSALARSRADWLYGLNMTRAYTL 206

Query: 184 LGKKAGYQGVLSVGRVQTPVLGLVVRRDEEIEHFIPHDYFTLDALIPYQNGTEYFDIRAR 243
            G+K GY GVLSVGRVQTP+LGLVVRRD +IEHF P D++ + A I    G  +    A+
Sbjct: 207 QGRKVGYAGVLSVGRVQTPLLGLVVRRDLDIEHFEPKDHYEVLAHITTDKGESFC---AK 263

Query: 244 WKPSEACLPWQDEEGRVTNRKLVDNVASRIANQPATVTESEQDQTKQAAPLPYSLSALQI 303
           W+PSEAC P+ DEEGRV +R+L + V SRI  +PA V        KQA PL YSLSALQI
Sbjct: 264 WQPSEACQPYMDEEGRVLSRRLAETVVSRIGGKPALVEHVSHKDKKQAPPLLYSLSALQI 323

Query: 304 DAAKRYNFSAQQVLDLCQSLYEKHKLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMV 363
           D AKR+  SA++VLD  QSLYE+HKLITYPRSD R+LPKE LA  PDV++A++ NA E++
Sbjct: 324 DCAKRFGMSAKEVLDTAQSLYERHKLITYPRSDSRHLPKEQLALVPDVLSAVSANAPELL 383

Query: 364 TAVNDADLSLRSKAWNDSKVDAHHAIIPTPKKASVNALSGHEMKVYQLIARQYLMQFYPA 423
                 DL L SKAW+DSKVDAHHAI+PT K+ +++ L+  E ++Y  IARQYL QFYP 
Sbjct: 384 EGAPSPDLHLVSKAWDDSKVDAHHAIVPTGKRTALSQLNQRERQLYLHIARQYLAQFYPN 443

Query: 424 AIYAEAKLVFNIAGGIFIAKGRQLLSAGWKVL-TGQQDEQEECVD----------KVPPL 472
            + A+ ++   I GG FIA+     + GW+VL  G+  EQ+E  +           +P L
Sbjct: 444 RLLADTEIQLIIEGGSFIARASVERAPGWRVLFQGRSTEQDEAKEPQETDASQKTPLPAL 503

Query: 473 PVGIVLQCREGEIKQRQTEPPRHFTEATLLQAMTGIARFVADKELKKILRETDGLGTEAT 532
             G + +C  GE+  +QT+PP+HFT+ATLL AMTGIAR+V+  ++K+IL++TDGLGTEAT
Sbjct: 504 NKGDIARCCHGELLAKQTQPPKHFTDATLLSAMTGIARYVSSPDIKRILKDTDGLGTEAT 563

Query: 533 RAGILDTLFKRGLLQRDNKLIKSTPAGRGLIHALPSEATYPDMTAHWEHQLQAIAEKGQA 592
           RAGI++ LFKRG L R  K I ++ AGRGLI +LP  AT  DMTA WE QL  I ++  +
Sbjct: 564 RAGIIELLFKRGFLVRQGKSIVASQAGRGLIASLPEVATTADMTALWERQLSDICQRQLS 623

Query: 593 YQPFMQTLQGRLEQLIEQVQVAPVPVSLQALPAVSKPAFKRTRRAPKSKAR 643
           Y+ FM  L   LE+LIEQ   A +P +L  + A   P      RA K K R
Sbjct: 624 YKGFMTPLVLELEKLIEQA-AASLPTALAGVTAAG-PKRSFRGRAGKGKGR 672